Non-Coding RNA Search

Pig1-42E05

Sequence:


               
               GATTTAATGTCGCACCTGTCACAGCAGCAGGAAGCTTTGTACTTTGTCGAAGTAAGGAAT
AGCAAATGAGCTGAAAACAAATGAAGAGACACAAATTCTAGGTTAACAGCCAGCTGGATG
GCTTTGTGAATTAATCATTTGCTTTTCACCCTTGGGGATTGAGGTTTTCCTGAAATCTGA
AAAGAACAAGTTGCAATCATGGTGATTAAATGACTCTGCAGGGTTGCAAAGAAGACGCAT
GAGTAGGTGAAGTTTCATCTCAAGAGGCCAGTGTACAAAGCAGGAAAGTACTGATGTTTC
ATTTCAGATTTCAAAGGAGATTTCGTATACTGACTTGGAGAAAAAATCAAAATAAATGTC
AATGAGATCTCCGAAAAATGTTTTTTTTTTTCCTTCTTCTTCAGGAGATGGCATAAATAA
CAATTGCATTTGTGTACCTCATGCACAGAGTTTCTTTGAAAAGATCCAAGGCTAATGACT
AAAATGTAGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTAATGTCGCACCTGTCACAGCAGCAGGAAGCTTTGTACTTTGTCGAAGTAAGGAAT
AGCAAATGAGCTGAAAACAAATGAAGAGACACAAATTCTAGGTTAACAGCCAGCTGGATG
GCTTTGTGAATTAATCATTTGCTTTTCACCCTTGGGGATTGAGGTTTTCCTGAAATCTGA
AAAGAACAAGTTGCAATCATGGTGATTAAATGACTCTGCAGGGTTGCAAAGAAGACGCAT
GAGTAGGTGAAGTTTCATCTCAAGAGGCCAGTGTACAAAGCAGGAAAGTACTGATGTTTC
ATTTCAGATTTCAAAGGAGATTTCGTATACTGACTTGGAGAAAAAATCAAAATAAATGTC
AATGAGATCTCCGAAAAATGTTTTTTTTTTTCCTTCTTCTTCAGGAGATGGCATAAATAA
CAATTGCATTTGTGTACCTCATGCACAGAGTTTCTTTGAAAAGATCCAAGGCTAATGACT
AAAATGTAGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, + strand, RNAz p=0.511061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, + strand, RNAz p=0.511061

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               72-148, + strand, RNAmicro p=0.9868

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               72-148, + strand, RNAmicro p=0.9868

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-490, gnl|bosTau2|chr10 (58498158-58498657)
               

               
               2-490, gnl|Hg17|chr14 (71194996-71195483)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-490, gnl|bosTau2|chr10 (58498158-58498657)
               

               
               2-490, gnl|Hg17|chr14 (71194996-71195483)

	2-490, gnl\|bosTau2\|chr10 (58498158-58498657)
	2-490, gnl\|Hg17\|chr14 (71194996-71195483)