Non-Coding RNA Search

Pig1-42J21

Sequence:


               
               TATGCCTCGCCAGAGATTGTCAATGGGAAGCCCTACATGGGCCCAGAGGTGGATAGCTGG
TCCCTGGGTGTTCTCCTGTACATCCTGGTGCATGGCTCCATGCCCTTTGATGGGCAGGAC
CATAAGACGCTAGTGAAACAGGGGGCAATGGGGCCTACAGGCAGCCACCTAAACCCTCTG
ACGCCTGTGGCCTGATCCGGTGGCTGTTAATGGTGAACCCTACCCGCCGGGCCACCCTGG
AGGATGTGGCCAGTCACTGGTGGGTCAACTGGGGCTACGCCACCCGTGTCGGGGAGCAGG
AGGCTCTGCACGAGGGAGGTCACCCAAGCAGCGACTCTGGCCGGGCCTCCATGGCTGACT
GGCTCCGGCGGTCCTCCCGTCCCCTCCTGGAGAACGGGGCCAAGGTCTGCAGCTTCTTCA
AGCAGCACGCACCGGGAGCAGGGAGCCTCACCCCTGGCCTGGAGCGCCAGCATTCGCTCA
AGAAGTCCCGCAAAGAGAATGACATGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCCTCGCCAGAGATTGTCAATGGGAAGCCCTACATGGGCCCAGAGGTGGATAGCTGG
TCCCTGGGTGTTCTCCTGTACATCCTGGTGCATGGCTCCATGCCCTTTGATGGGCAGGAC
CATAAGACGCTAGTGAAACAGGGGGCAATGGGGCCTACAGGCAGCCACCTAAACCCTCTG
ACGCCTGTGGCCTGATCCGGTGGCTGTTAATGGTGAACCCTACCCGCCGGGCCACCCTGG
AGGATGTGGCCAGTCACTGGTGGGTCAACTGGGGCTACGCCACCCGTGTCGGGGAGCAGG
AGGCTCTGCACGAGGGAGGTCACCCAAGCAGCGACTCTGGCCGGGCCTCCATGGCTGACT
GGCTCCGGCGGTCCTCCCGTCCCCTCCTGGAGAACGGGGCCAAGGTCTGCAGCTTCTTCA
AGCAGCACGCACCGGGAGCAGGGAGCCTCACCCCTGGCCTGGAGCGCCAGCATTCGCTCA
AGAAGTCCCGCAAAGAGAATGACATGGCCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               393-511, + strand, RNAz p=0.861035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-511, + strand, RNAz p=0.861035

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               174-511, gnl|bosTau2|chr16 (1158023-1157685)
               

               
               174-511, gnl|Hg17|chr1 (202005306-202004968)
               

               
               174-511, gnl|Mm7|chr1 (132231815-132232153)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-511, gnl|bosTau2|chr16 (1158023-1157685)
               

               
               174-511, gnl|Hg17|chr1 (202005306-202004968)
               

               
               174-511, gnl|Mm7|chr1 (132231815-132232153)

	174-511, gnl\|bosTau2\|chr16 (1158023-1157685)
	174-511, gnl\|Hg17\|chr1 (202005306-202004968)
	174-511, gnl\|Mm7\|chr1 (132231815-132232153)