Non-Coding RNA Search

Pig1-43B21

Sequence:


               
               GCGGTTTCTTCTCCCAGCAGCTCAAGGATCTACAAGCCTCTACCCCCTGTCCCTGTCATG
GATCCTCCTACTGAACCACCCCCATTACCCCCAAAGTCTAGGGGGAGGAGCAGGAGCACT
CAGGGAGGACTTGTGCATTCAGGGGATCAAGCCAAGACAAGGCCTATTTGTCAAGAGAGG
ACAATCTCCACTCCCCATTCTGCAGGACGCACCTCCTGGCCTCCAGCCATGGGCAGATCA
ACAGACTCTTTGGTTTCTACCAGTAGGAGTAAGAGTGAAGTGCCCCCTGGCATGGCTTTC
AGCAACATGACCACCCTTCTAAGTCCCTCTTCCCCAACCACCTCCTGGTCTCTGGAGGGC
CAGGGACCAACTTCTGAACCAGGATTCTCAGAAGAGTCTGAAGTCCCTGTCCCTGTTCTG
AGAAGAACAGCCCCTCAGGAAGGAGCCAATGGCCTGAGGAGGTCGGATCTGGGGCGAGCA
AGGCAGCCAGAAAAACCCAGCCATCCCCAACTGGAAAAGTCATCCAGCTGGCCCCACAGA
CGCGAACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTTTCTTCTCCCAGCAGCTCAAGGATCTACAAGCCTCTACCCCCTGTCCCTGTCATG
GATCCTCCTACTGAACCACCCCCATTACCCCCAAAGTCTAGGGGGAGGAGCAGGAGCACT
CAGGGAGGACTTGTGCATTCAGGGGATCAAGCCAAGACAAGGCCTATTTGTCAAGAGAGG
ACAATCTCCACTCCCCATTCTGCAGGACGCACCTCCTGGCCTCCAGCCATGGGCAGATCA
ACAGACTCTTTGGTTTCTACCAGTAGGAGTAAGAGTGAAGTGCCCCCTGGCATGGCTTTC
AGCAACATGACCACCCTTCTAAGTCCCTCTTCCCCAACCACCTCCTGGTCTCTGGAGGGC
CAGGGACCAACTTCTGAACCAGGATTCTCAGAAGAGTCTGAAGTCCCTGTCCCTGTTCTG
AGAAGAACAGCCCCTCAGGAAGGAGCCAATGGCCTGAGGAGGTCGGATCTGGGGCGAGCA
AGGCAGCCAGAAAAACCCAGCCATCCCCAACTGGAAAAGTCATCCAGCTGGCCCCACAGA
CGCGAACCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               284-474, - strand, RNAz p=0.99881

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-474, - strand, RNAz p=0.99881

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-548, gnl|bosTau2|chr4 (61754329-61754872)
               

               
               7-548, gnl|Hg17|chr7 (143499890-143500442)
               

               
               7-548, gnl|Mm7|chr6 (43316290-43316839)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-548, gnl|bosTau2|chr4 (61754329-61754872)
               

               
               7-548, gnl|Hg17|chr7 (143499890-143500442)
               

               
               7-548, gnl|Mm7|chr6 (43316290-43316839)

	7-548, gnl\|bosTau2\|chr4 (61754329-61754872)
	7-548, gnl\|Hg17\|chr7 (143499890-143500442)
	7-548, gnl\|Mm7\|chr6 (43316290-43316839)