Non-Coding RNA Search

Pig1-43I04

Sequence:


               
               GGTCAGGCACCTATACCCAGCCACCTCCTGACTATCTTCCTTCAGAGCCCAGGCACGGCC
TGGAGTTTGAGTCCCCTACTCATTCTACAGGACAGCTCAAGGCTCAGCTTGTGTGTAATT
ATGTTCAGTCTCAACAGGAACTGCTGTGGGAGGGCGGTGGAAGGGGAGATCCCCCAGTCC
AGGAACCTCTCTACCAGAGTTCCAAGTTTCTGGGGGGTTCCCAGGTTAGCCCGAGCCCTG
CCAGAGCCCCAGTGGCCACATACGGACCTGGCTTTGCACCTAACCTGCCCAGTCACAAGT
CAGGCTCCTATCCTACCCCTTCACCATGCCATGAAAATTTTGCAGTCGGNGCAAACAAGG
CTTCCCACAGGGCAGCAGCACTACCCCGACTTCTGCCCCCGCTACCCACTTGCTACGGGC
CCCTCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCAGGCACCTATACCCAGCCACCTCCTGACTATCTTCCTTCAGAGCCCAGGCACGGCC
TGGAGTTTGAGTCCCCTACTCATTCTACAGGACAGCTCAAGGCTCAGCTTGTGTGTAATT
ATGTTCAGTCTCAACAGGAACTGCTGTGGGAGGGCGGTGGAAGGGGAGATCCCCCAGTCC
AGGAACCTCTCTACCAGAGTTCCAAGTTTCTGGGGGGTTCCCAGGTTAGCCCGAGCCCTG
CCAGAGCCCCAGTGGCCACATACGGACCTGGCTTTGCACCTAACCTGCCCAGTCACAAGT
CAGGCTCCTATCCTACCCCTTCACCATGCCATGAAAATTTTGCAGTCGGNGCAAACAAGG
CTTCCCACAGGGCAGCAGCACTACCCCGACTTCTGCCCCCGCTACCCACTTGCTACGGGC
CCCTCAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-237, - strand, RNAz p=0.813424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-237, - strand, RNAz p=0.813424

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               133-220, + strand, RNAmicro p=0.994029
               

               
               68-175, - strand, RNAmicro p=0.95804

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               133-220, + strand, RNAmicro p=0.994029
               

               
               68-175, - strand, RNAmicro p=0.95804

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-428, gnl|bosTau2|chr5 (34810236-34809813)
               

               
               2-428, gnl|Hg17|chr12 (56151373-56151799)
               

               
               2-428, gnl|Mm7|chr10 (126832193-126831755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-428, gnl|bosTau2|chr5 (34810236-34809813)
               

               
               2-428, gnl|Hg17|chr12 (56151373-56151799)
               

               
               2-428, gnl|Mm7|chr10 (126832193-126831755)

	133-220, + strand, RNAmicro p=0.994029
	68-175, - strand, RNAmicro p=0.95804

	2-428, gnl\|bosTau2\|chr5 (34810236-34809813)
	2-428, gnl\|Hg17\|chr12 (56151373-56151799)
	2-428, gnl\|Mm7\|chr10 (126832193-126831755)