Non-Coding RNA Search

Pig1-44D18

Sequence:


               
               GATCAGTATTGTTGAGTATTAGCTTGTACCTGGTTCGGAGACTAAGTAAGTATTTACCTT
CCAGTTTGGGGCTGGGGGCTGGGGGCTGCGCGATCTGAAAACTGGATCTCTCTTCCCTTC
CCTCACAAATATTGGAGGGCCCAAGTTCCAAGGCCTAGTGGAAGGGGAGGGACTCGTATC
CCCTTTTCCATCCTCGGAACTTGCAGAAGTTGCCCGTGGCCGGCATCGTGCCGTGCCGTC
TGCCTCCTTTCCAGCCCAGCCTGCTGTTTTTGACTCTCTTATCCGAGCACCCTTTGGCTC
TGCGCCCTGGAGCTGTGACAGTGAGGTTCTGGGGGCTCCCCTGAGTTGGCCCGGCGTCTT
TTGTCATACGTTAGGCTGGGGCCCAGCCGGGCCTTTCTTATGAAGAGAGAGAGAGCACAA
GAAAGCACCCCCCCCCAACCCCGCCCCGCGATGCCTGGGTATCTCGGGTGTTTCTCCTTG
CGAAGGCCCAGGCTCAGGCTGAGGGTTTGTCCTCTGGCTGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCAGTATTGTTGAGTATTAGCTTGTACCTGGTTCGGAGACTAAGTAAGTATTTACCTT
CCAGTTTGGGGCTGGGGGCTGGGGGCTGCGCGATCTGAAAACTGGATCTCTCTTCCCTTC
CCTCACAAATATTGGAGGGCCCAAGTTCCAAGGCCTAGTGGAAGGGGAGGGACTCGTATC
CCCTTTTCCATCCTCGGAACTTGCAGAAGTTGCCCGTGGCCGGCATCGTGCCGTGCCGTC
TGCCTCCTTTCCAGCCCAGCCTGCTGTTTTTGACTCTCTTATCCGAGCACCCTTTGGCTC
TGCGCCCTGGAGCTGTGACAGTGAGGTTCTGGGGGCTCCCCTGAGTTGGCCCGGCGTCTT
TTGTCATACGTTAGGCTGGGGCCCAGCCGGGCCTTTCTTATGAAGAGAGAGAGAGCACAA
GAAAGCACCCCCCCCCAACCCCGCCCCGCGATGCCTGGGTATCTCGGGTGTTTCTCCTTG
CGAAGGCCCAGGCTCAGGCTGAGGGTTTGTCCTCTGGCTGGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-415, + strand, RNAz p=0.776172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-415, + strand, RNAz p=0.776172

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-415, gnl|bosTau2|chr17 (38089134-38089553)
               

               
               2-415, gnl|Hg17|chr12 (112372564-112372972)
               

               
               2-415, gnl|Mm7|chr5 (119665715-119665319)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-415, gnl|bosTau2|chr17 (38089134-38089553)
               

               
               2-415, gnl|Hg17|chr12 (112372564-112372972)
               

               
               2-415, gnl|Mm7|chr5 (119665715-119665319)

	2-415, gnl\|bosTau2\|chr17 (38089134-38089553)
	2-415, gnl\|Hg17\|chr12 (112372564-112372972)
	2-415, gnl\|Mm7\|chr5 (119665715-119665319)