Non-Coding RNA Search

Pig1-44E17

Sequence:


               
               GGGAGGACCCCAGGGAAGGTCTGCGGAGCGGTGAGGTGGAAAGCGGGTTGGCTTTGGGCT
TCTTCTCTCTGACCCGCTTCCTTTCCCCACAGCCTGCGGCGAGAGGGCTACACGGTGCAG
GTGAATGTGAACGATTATCTGGATATTTACTGCCCTCACTACAACAGCTCAGGGGTGGGC
CCCGGGGCGGGGCCAGGGCCTGGAGGCGGGGCGGAGCAGTACGTGCTGTATATGGTGAGC
CGGGCGGGCTACCGCACCTGCAACGCCAGCCAAGGCTTCAAGCGCTGGGAGTGCAACCGA
CCGCACGCCCCTCATAGCCCCATCAAGTTCTCGGAGAAGTTCCAGCGCTACAGCGCCTTC
TCGCTGGGCTACGAGTTCCACGCCGGCCACGAGTACTACTACATCTCCACGCCCACCCAT
AACCTGCATTGGAAGTGTCTGAGGATGAAGGTGTTCGTCTGCTGCGCCTCCACATCGCAC
TCCGGGGAGAAGCCGGTCCCCACTCTCCCCCAGTTCACCATGGGCCCCAATGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGACCCCAGGGAAGGTCTGCGGAGCGGTGAGGTGGAAAGCGGGTTGGCTTTGGGCT
TCTTCTCTCTGACCCGCTTCCTTTCCCCACAGCCTGCGGCGAGAGGGCTACACGGTGCAG
GTGAATGTGAACGATTATCTGGATATTTACTGCCCTCACTACAACAGCTCAGGGGTGGGC
CCCGGGGCGGGGCCAGGGCCTGGAGGCGGGGCGGAGCAGTACGTGCTGTATATGGTGAGC
CGGGCGGGCTACCGCACCTGCAACGCCAGCCAAGGCTTCAAGCGCTGGGAGTGCAACCGA
CCGCACGCCCCTCATAGCCCCATCAAGTTCTCGGAGAAGTTCCAGCGCTACAGCGCCTTC
TCGCTGGGCTACGAGTTCCACGCCGGCCACGAGTACTACTACATCTCCACGCCCACCCAT
AACCTGCATTGGAAGTGTCTGAGGATGAAGGTGTTCGTCTGCTGCGCCTCCACATCGCAC
TCCGGGGAGAAGCCGGTCCCCACTCTCCCCCAGTTCACCATGGGCCCCAATGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38258890|sp|O08545|EFNA3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38258890|sp|O08545|EFNA3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-230, + strand, RNAz p=0.599796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-230, + strand, RNAz p=0.599796

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-406, gnl|bosTau2|chr3 (9174118-9174520)
               

               
               4-406, gnl|Hg17|chr1 (151870549-151870953)
               

               
               4-406, gnl|Mm7|chr3 (89443515-89443127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-406, gnl|bosTau2|chr3 (9174118-9174520)
               

               
               4-406, gnl|Hg17|chr1 (151870549-151870953)
               

               
               4-406, gnl|Mm7|chr3 (89443515-89443127)

	4-406, gnl\|bosTau2\|chr3 (9174118-9174520)
	4-406, gnl\|Hg17\|chr1 (151870549-151870953)
	4-406, gnl\|Mm7\|chr3 (89443515-89443127)