Non-Coding RNA Search

Pig1-47C17

Sequence:


               
               GGAAATTATTTTAAAAGATAGGCATCTTTAGAAAAAACACTGAGCAACCCTGTGGTATGT
TGTGCCTCTCCCACCCCTTCTTTGCGTTGGGGCTGAATGGCATAAATGGTGAACCTTGGT
CCTGACAGGACTGGCTCTTGTATCATAGAATCAAAACTTTTTACACCAACAGAATTCAGT
AAGGAATGGGGGAAAACTAGAAACTGCTTTGAGAAGCCCCTTCATATTTATTTATTTATC
TCTTCCTGGACCATGAATTTCATATTTGGAATATTGCTGTATTGACAGATTATTGCCTGT
CTCTGTTTTTCTAGGGTCTGTTATAGGTCCATGAAAATTACTGTCCATTATTTCCTGGGA
AAATATTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATTATTTTAAAAGATAGGCATCTTTAGAAAAAACACTGAGCAACCCTGTGGTATGT
TGTGCCTCTCCCACCCCTTCTTTGCGTTGGGGCTGAATGGCATAAATGGTGAACCTTGGT
CCTGACAGGACTGGCTCTTGTATCATAGAATCAAAACTTTTTACACCAACAGAATTCAGT
AAGGAATGGGGGAAAACTAGAAACTGCTTTGAGAAGCCCCTTCATATTTATTTATTTATC
TCTTCCTGGACCATGAATTTCATATTTGGAATATTGCTGTATTGACAGATTATTGCCTGT
CTCTGTTTTTCTAGGGTCTGTTATAGGTCCATGAAAATTACTGTCCATTATTTCCTGGGA
AAATATTTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               248-366, + strand, RNAz p=0.644203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-366, + strand, RNAz p=0.644203

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152538, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152538, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-371, gnl|bosTau2|chr16 (27547017-27547388)
               

               
               2-371, gnl|Hg17|chr3 (120103683-120103311)
               

               
               2-371, gnl|Mm7|chr16 (38743184-38743581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-371, gnl|bosTau2|chr16 (27547017-27547388)
               

               
               2-371, gnl|Hg17|chr3 (120103683-120103311)
               

               
               2-371, gnl|Mm7|chr16 (38743184-38743581)

	2-371, gnl\|bosTau2\|chr16 (27547017-27547388)
	2-371, gnl\|Hg17\|chr3 (120103683-120103311)
	2-371, gnl\|Mm7\|chr16 (38743184-38743581)