Pig1-48C13
|
GCAAAAAGGAAAAAAAAGGAAAAAAGAAAAAAAAAAAAAAAGGATTACCCGGTCTTTCCT
TTAGGCCTCGGTTGCACAAGGGGGAAAAGGCCCCCACTGTTGCCCTCCGGGGGGACCCAT
TCAAAGGTTTTGGCCCACCTGGGGCTTGGAAACCACCCCCGGGGTTTTTTCCGGGCCCCG
TTTTTCCAGCATTTCCACCGGAAAAGTCCCAAACCCGTTTGCCCCTGGGGGGGGGCTGGG
GCCCCCAGCCAGTTTTGTTAAGGACCTGTTTTTTTTCAGGGAAAAAAATTTATGTTTTAT
ATGGGGCTTTTTTTCCTAAACCACCTGTGTTTTTTTTTAACCCAGGGTCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAAAAAGGAAAAAAAAGGAAAAAAGAAAAAAAAAAAAAAAGGATTACCCGGTCTTTCCT
TTAGGCCTCGGTTGCACAAGGGGGAAAAGGCCCCCACTGTTGCCCTCCGGGGGGACCCAT
TCAAAGGTTTTGGCCCACCTGGGGCTTGGAAACCACCCCCGGGGTTTTTTCCGGGCCCCG
TTTTTCCAGCATTTCCACCGGAAAAGTCCCAAACCCGTTTGCCCCTGGGGGGGGGCTGGG
GCCCCCAGCCAGTTTTGTTAAGGACCTGTTTTTTTTCAGGGAAAAAAATTTATGTTTTAT
ATGGGGCTTTTTTTCCTAAACCACCTGTGTTTTTTTTTAACCCAGGGTCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
195-318, - strand, RNAmicro p=0.998287 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
195-318, - strand, RNAmicro p=0.998287 |
|
129-226, DB803293 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803293.1|), blast E-value=0.0000000000003, identity=85.71% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
129-226, DB803293 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803293.1|), blast E-value=0.0000000000003, identity=85.71% |
|
14-350, gnl|bosTau2|chr22 (7228648-7228309) |
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14-350, gnl|canFam2|chrX (104072933-104073318) |
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14-350, gnl|echTel1|scaffold_318357 (9828-10237) |
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14-350, gnl|hg17|chrX (128664505-128664871) |
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14-350, gnl|Hg17|chrX (128664852-128664530) |
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14-350, gnl|loxAfr1|scaffold_8697 (3496-3132) |
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14-350, gnl|mm7|chrX (43264281-43264664) |
|
14-350, gnl|Mm7|chrX (43264645-43264306) |
|
14-350, gnl|monDom2|scaffold_126 (2398564-2398903) |
|
14-350, gnl|panTro1|chrX (132898421-132898783) |
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14-350, gnl|rheMac2|chrX (128041446-128041807) |
|
14-350, gnl|rn3|chrX (134610931-134611304) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
14-350, gnl|bosTau2|chr22 (7228648-7228309) |
|
14-350, gnl|canFam2|chrX (104072933-104073318) |
|
14-350, gnl|echTel1|scaffold_318357 (9828-10237) |
|
14-350, gnl|hg17|chrX (128664505-128664871) |
|
14-350, gnl|Hg17|chrX (128664852-128664530) |
|
14-350, gnl|loxAfr1|scaffold_8697 (3496-3132) |
|
14-350, gnl|mm7|chrX (43264281-43264664) |
|
14-350, gnl|Mm7|chrX (43264645-43264306) |
|
14-350, gnl|monDom2|scaffold_126 (2398564-2398903) |
|
14-350, gnl|panTro1|chrX (132898421-132898783) |
|
14-350, gnl|rheMac2|chrX (128041446-128041807) |
|
14-350, gnl|rn3|chrX (134610931-134611304) |
