Pig1-48K18
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTGATTAGAGACCAAGGGTTTCGTAGTGATGGAGGATCCACCACAGGTTTGTCTGCCA CGCCCCCTGCCTCATTACCTGGCTCACTCACTAATGTGAAAGCATTACAGAAATCTCCAG GACCTCAGCGAGAGAGGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACAC TTGGTAGACGGGATTCAAGTGATGATTGGGAGATTCCTGATGGGCAGATCACAGTGGGAC AAAGAATTGGATCTGGGTCGTTTGGGACAGTCTACAAGGGAAAGTGGCATGGTGATGTGG CAGTGAAAATGTTGAATGTGACAGCACCCACACCTCAGCAGTTACAGGCCTTCAAAAATG AAGTAGGAGTACTCAGGAAAACTCGACATGTGAATATCCTACTCTTCATGGGTTATTCAA CAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTATATCATCATC TCCACATCATTGAGACCAAATTCGAGATGATCAAACTTATAGATATTGCACGGCAGACTG CACAGGGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTGATTAGAGACCAAGGGTTTCGTAGTGATGGAGGATCCACCACAGGTTTGTCTGCCA CGCCCCCTGCCTCATTACCTGGCTCACTCACTAATGTGAAAGCATTACAGAAATCTCCAG GACCTCAGCGAGAGAGGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACAC TTGGTAGACGGGATTCAAGTGATGATTGGGAGATTCCTGATGGGCAGATCACAGTGGGAC AAAGAATTGGATCTGGGTCGTTTGGGACAGTCTACAAGGGAAAGTGGCATGGTGATGTGG CAGTGAAAATGTTGAATGTGACAGCACCCACACCTCAGCAGTTACAGGCCTTCAAAAATG AAGTAGGAGTACTCAGGAAAACTCGACATGTGAATATCCTACTCTTCATGGGTTATTCAA CAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTATATCATCATC TCCACATCATTGAGACCAAATTCGAGATGATCAAACTTATAGATATTGCACGGCAGACTG CACAGGGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 374-493, - strand, RNAz p=0.725329 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 374-493, - strand, RNAz p=0.725329 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 35-173, gnl|bosTau2|chr27 (12131649-12131511) | |
| 35-173, gnl|canFam2|chr16 (11238406-11238251) | |
| 35-173, gnl|canFam2|chr16 (11238251-11238388) | |
| 35-173, gnl|danRer3|chr4 (7285490-7285338) | |
| 35-173, gnl|danRer3|chr4 (7285338-7285472) | |
| 35-173, gnl|dasNov1|scaffold_13313 (40023-40178) | |
| 35-173, gnl|dasNov1|scaffold_13313 (40178-40041) | |
| 35-173, gnl|echTel1|scaffold_300783 (2159-2015) | |
| 35-173, gnl|echTel1|scaffold_300783 (2015-2152) | |
| 35-173, gnl|fr1|chrUn (203086553-203086388) | |
| 35-173, gnl|fr1|chrUn (203086388-203086525) | |
| 35-173, gnl|galGal2|chr1 (53630330-53630504) | |
| 35-173, gnl|galGal2|chr1 (53630504-53630367) | |
| 35-173, gnl|hg17|chr7 (139935989-139936144) | |
| 35-173, gnl|Hg17|chr7 (139936143-139936005) | |
| 35-173, gnl|hg17|chrX (74586834-74586963) | |
| 35-173, gnl|loxAfr1|scaffold_3913 (17937-18090) | |
| 35-173, gnl|loxAfr1|scaffold_3913 (18090-17953) | |
| 35-173, gnl|mm7|chr10 (31753453-31753318) | |
| 35-173, gnl|mm7|chr6 (39574251-39574408) | |
| 35-173, gnl|Mm7|chr6 (39574407-39574263) | |
| 35-173, gnl|monDom2|scaffold_22 (1365920-1365764) | |
| 35-173, gnl|monDom2|scaffold_22 (1365764-1365901) | |
| 35-173, gnl|oryCun1|scaffold_142481 (17504-17659) | |
| 35-173, gnl|oryCun1|scaffold_142481 (17659-17522) | |
| 35-173, gnl|panTro1|chr6 (142694541-142694696) | |
| 35-173, gnl|panTro1|chrX (77179244-77179373) | |
| 35-173, gnl|rheMac2|chr3 (178256979-178257134) | |
| 35-173, gnl|rheMac2|chrX (74602474-74602603) | |
| 35-173, gnl|rn3|chr4 (67431023-67431187) | |
| 35-173, gnl|rn3|chr4 (67431187-67431041) | |
| 35-173, gnl|tetNig1|chrUn_random (48320540-48320397) | |
| 35-173, gnl|tetNig1|chrUn_random (48320397-48320534) | |
| 35-173, gnl|xenTro1|scaffold_840 (482890-482716) | |
| 35-173, gnl|xenTro1|scaffold_840 (482716-482856) | |
| 374-550, gnl|bosTau2|chr27 (12126347-12126171) | |
| 374-550, gnl|canFam2|chr16 (11242460-11242304) | |
| 374-550, gnl|canFam2|chr16 (11242268-11242447) | |
| 374-550, gnl|danRer3|chr4 (7287898-7287742) | |
| 374-550, gnl|danRer3|chr4 (7287706-7287885) | |
| 374-550, gnl|dasNov1|scaffold_41230 (13658-13479) | |
| 374-550, gnl|dasNov1|scaffold_56896 (45923-46079) | |
| 374-550, gnl|echTel1|scaffold_300783 (6965-6809) | |
| 374-550, gnl|echTel1|scaffold_300783 (6773-6952) | |
| 374-550, gnl|fr1|chrUn (203087366-203087214) | |
| 374-550, gnl|fr1|chrUn (203087178-203087357) | |
| 374-550, gnl|galGal2|chr1 (53625918-53626072) | |
| 374-550, gnl|galGal2|chr1 (53626108-53625929) | |
| 374-550, gnl|hg17|chr7 (139929884-139930040) | |
| 374-550, gnl|Hg17|chr7 (139930075-139929899) | |
| 374-550, gnl|hg17|chrX (74587164-74587343) | |
| 374-550, gnl|loxAfr1|scaffold_3913 (13413-13569) | |
| 374-550, gnl|loxAfr1|scaffold_3913 (13605-13426) | |
| 374-550, gnl|mm7|chr10 (31753117-31752938) | |
| 374-550, gnl|mm7|chr6 (39569603-39569759) | |
| 374-550, gnl|Mm7|chr6 (39569794-39569618) | |
| 374-550, gnl|monDom2|scaffold_22 (1371578-1371422) | |
| 374-550, gnl|monDom2|scaffold_22 (1371386-1371565) | |
| 374-550, gnl|oryCun1|scaffold_142481 (9838-9994) | |
| 374-550, gnl|oryCun1|scaffold_201855 (53007-53186) | |
| 374-550, gnl|panTro1|chr6 (142688415-142688571) | |
| 374-550, gnl|panTro1|chrX (77179574-77179753) | |
| 374-550, gnl|rheMac2|chrX (74602984-74602841) | |
| 374-550, gnl|rheMac2|chrX (74602805-74602984) | |
| 374-550, gnl|rn3|chr4 (67425076-67425232) | |
| 374-550, gnl|rn3|chr4 (67425268-67425089) | |
| 374-550, gnl|tetNig1|chrUn_random (48322877-48322728) | |
| 374-550, gnl|tetNig1|chrUn_random (48322692-48322871) | |
| 374-550, gnl|xenTro1|scaffold_840 (484869-484720) | |
| 374-550, gnl|xenTro1|scaffold_840 (484684-484863) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-173, gnl|bosTau2|chr27 (12131649-12131511) | |
| 35-173, gnl|canFam2|chr16 (11238406-11238251) | |
| 35-173, gnl|canFam2|chr16 (11238251-11238388) | |
| 35-173, gnl|danRer3|chr4 (7285490-7285338) | |
| 35-173, gnl|danRer3|chr4 (7285338-7285472) | |
| 35-173, gnl|dasNov1|scaffold_13313 (40023-40178) | |
| 35-173, gnl|dasNov1|scaffold_13313 (40178-40041) | |
| 35-173, gnl|echTel1|scaffold_300783 (2159-2015) | |
| 35-173, gnl|echTel1|scaffold_300783 (2015-2152) | |
| 35-173, gnl|fr1|chrUn (203086553-203086388) | |
| 35-173, gnl|fr1|chrUn (203086388-203086525) | |
| 35-173, gnl|galGal2|chr1 (53630330-53630504) | |
| 35-173, gnl|galGal2|chr1 (53630504-53630367) | |
| 35-173, gnl|hg17|chr7 (139935989-139936144) | |
| 35-173, gnl|Hg17|chr7 (139936143-139936005) | |
| 35-173, gnl|hg17|chrX (74586834-74586963) | |
| 35-173, gnl|loxAfr1|scaffold_3913 (17937-18090) | |
| 35-173, gnl|loxAfr1|scaffold_3913 (18090-17953) | |
| 35-173, gnl|mm7|chr10 (31753453-31753318) | |
| 35-173, gnl|mm7|chr6 (39574251-39574408) | |
| 35-173, gnl|Mm7|chr6 (39574407-39574263) | |
| 35-173, gnl|monDom2|scaffold_22 (1365920-1365764) | |
| 35-173, gnl|monDom2|scaffold_22 (1365764-1365901) | |
| 35-173, gnl|oryCun1|scaffold_142481 (17504-17659) | |
| 35-173, gnl|oryCun1|scaffold_142481 (17659-17522) | |
| 35-173, gnl|panTro1|chr6 (142694541-142694696) | |
| 35-173, gnl|panTro1|chrX (77179244-77179373) | |
| 35-173, gnl|rheMac2|chr3 (178256979-178257134) | |
| 35-173, gnl|rheMac2|chrX (74602474-74602603) | |
| 35-173, gnl|rn3|chr4 (67431023-67431187) | |
| 35-173, gnl|rn3|chr4 (67431187-67431041) | |
| 35-173, gnl|tetNig1|chrUn_random (48320540-48320397) | |
| 35-173, gnl|tetNig1|chrUn_random (48320397-48320534) | |
| 35-173, gnl|xenTro1|scaffold_840 (482890-482716) | |
| 35-173, gnl|xenTro1|scaffold_840 (482716-482856) | |
| 374-550, gnl|bosTau2|chr27 (12126347-12126171) | |
| 374-550, gnl|canFam2|chr16 (11242460-11242304) | |
| 374-550, gnl|canFam2|chr16 (11242268-11242447) | |
| 374-550, gnl|danRer3|chr4 (7287898-7287742) | |
| 374-550, gnl|danRer3|chr4 (7287706-7287885) | |
| 374-550, gnl|dasNov1|scaffold_41230 (13658-13479) | |
| 374-550, gnl|dasNov1|scaffold_56896 (45923-46079) | |
| 374-550, gnl|echTel1|scaffold_300783 (6965-6809) | |
| 374-550, gnl|echTel1|scaffold_300783 (6773-6952) | |
| 374-550, gnl|fr1|chrUn (203087366-203087214) | |
| 374-550, gnl|fr1|chrUn (203087178-203087357) | |
| 374-550, gnl|galGal2|chr1 (53625918-53626072) | |
| 374-550, gnl|galGal2|chr1 (53626108-53625929) | |
| 374-550, gnl|hg17|chr7 (139929884-139930040) | |
| 374-550, gnl|Hg17|chr7 (139930075-139929899) | |
| 374-550, gnl|hg17|chrX (74587164-74587343) | |
| 374-550, gnl|loxAfr1|scaffold_3913 (13413-13569) | |
| 374-550, gnl|loxAfr1|scaffold_3913 (13605-13426) | |
| 374-550, gnl|mm7|chr10 (31753117-31752938) | |
| 374-550, gnl|mm7|chr6 (39569603-39569759) | |
| 374-550, gnl|Mm7|chr6 (39569794-39569618) | |
| 374-550, gnl|monDom2|scaffold_22 (1371578-1371422) | |
| 374-550, gnl|monDom2|scaffold_22 (1371386-1371565) | |
| 374-550, gnl|oryCun1|scaffold_142481 (9838-9994) | |
| 374-550, gnl|oryCun1|scaffold_201855 (53007-53186) | |
| 374-550, gnl|panTro1|chr6 (142688415-142688571) | |
| 374-550, gnl|panTro1|chrX (77179574-77179753) | |
| 374-550, gnl|rheMac2|chrX (74602984-74602841) | |
| 374-550, gnl|rheMac2|chrX (74602805-74602984) | |
| 374-550, gnl|rn3|chr4 (67425076-67425232) | |
| 374-550, gnl|rn3|chr4 (67425268-67425089) | |
| 374-550, gnl|tetNig1|chrUn_random (48322877-48322728) | |
| 374-550, gnl|tetNig1|chrUn_random (48322692-48322871) | |
| 374-550, gnl|xenTro1|scaffold_840 (484869-484720) | |
| 374-550, gnl|xenTro1|scaffold_840 (484684-484863) |