Non-Coding RNA Search

Pig1-48N20

Sequence:


               
               GGGTggctcgggttccatgttgctgtggctgtggtgtaggctgacagctgtagctccaat
tagacccctaacataggaacctccgtatgccataggtgtggccctAAAAAGCAAAAAAGA
AAAAGAAAAAGTTATTCTGGCTAAACTGCATCATTTTGACTTTATCATTTTGTAAAGTGG
AGCTATAATCTTAACCATGTAGTATGGTTTGTATAATGATGACCTAGAACTGGAAATGCT
AAGGGCACCTTAATGTAGCAGGCAAATACTAAATAGATGTTTCCCCTTTGGATCAGTTTA
GAATTTTCCCTTCTTACTAGACACTACATATAGTTGTTTTCTGGAGGAAAACAGACTGTT
TCAGTATTTGTCCTTGTTAGCATATATCATCAGAACTCAGTATCTGATAAGTGTAACCTG
CCTTATAAGAAAACCAAAATTTCTTGATTTATCTCTTGAAATTATGATTTCTTGCTCTGA
TTTTCTGAATTCCTATCTGTAAAGTGGCTGTAAGCAATCCCTACCTCACAGGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTggctcgggttccatgttgctgtggctgtggtgtaggctgacagctgtagctccaat
tagacccctaacataggaacctccgtatgccataggtgtggccctAAAAAGCAAAAAAGA
AAAAGAAAAAGTTATTCTGGCTAAACTGCATCATTTTGACTTTATCATTTTGTAAAGTGG
AGCTATAATCTTAACCATGTAGTATGGTTTGTATAATGATGACCTAGAACTGGAAATGCT
AAGGGCACCTTAATGTAGCAGGCAAATACTAAATAGATGTTTCCCCTTTGGATCAGTTTA
GAATTTTCCCTTCTTACTAGACACTACATATAGTTGTTTTCTGGAGGAAAACAGACTGTT
TCAGTATTTGTCCTTGTTAGCATATATCATCAGAACTCAGTATCTGATAAGTGTAACCTG
CCTTATAAGAAAACCAAAATTTCTTGATTTATCTCTTGAAATTATGATTTCTTGCTCTGA
TTTTCTGAATTCCTATCTGTAAAGTGGCTGTAAGCAATCCCTACCTCACAGGGGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               263-380, - strand, RNAz p=0.994233
               

               
               315-483, + strand, RNAz p=0.864534

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-380, - strand, RNAz p=0.994233
               

               
               315-483, + strand, RNAz p=0.864534

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               126-536, gnl|bosTau2|chr10 (51623441-51623857)
               

               
               126-536, gnl|canFam2|chr8 (41940963-41941236)
               

               
               126-536, gnl|echTel1|scaffold_297403 (105691-105418)
               

               
               126-536, gnl|hg17|chr14 (64019330-64019592)
               

               
               126-536, gnl|Hg17|chr14 (64019759-64019349)
               

               
               126-536, gnl|loxAfr1|scaffold_2075 (68890-69234)
               

               
               126-536, gnl|mm7|chr12 (74303710-74303936)
               

               
               126-536, gnl|monDom2|scaffold_8 (78178332-78178574)
               

               
               126-536, gnl|oryCun1|scaffold_205866 (70026-70262)
               

               
               126-536, gnl|panTro1|chr15 (63587150-63587412)
               

               
               126-536, gnl|rn3|chr6 (98947791-98948014)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-536, gnl|bosTau2|chr10 (51623441-51623857)
               

               
               126-536, gnl|canFam2|chr8 (41940963-41941236)
               

               
               126-536, gnl|echTel1|scaffold_297403 (105691-105418)
               

               
               126-536, gnl|hg17|chr14 (64019330-64019592)
               

               
               126-536, gnl|Hg17|chr14 (64019759-64019349)
               

               
               126-536, gnl|loxAfr1|scaffold_2075 (68890-69234)
               

               
               126-536, gnl|mm7|chr12 (74303710-74303936)
               

               
               126-536, gnl|monDom2|scaffold_8 (78178332-78178574)
               

               
               126-536, gnl|oryCun1|scaffold_205866 (70026-70262)
               

               
               126-536, gnl|panTro1|chr15 (63587150-63587412)
               

               
               126-536, gnl|rn3|chr6 (98947791-98948014)

	263-380, - strand, RNAz p=0.994233
	315-483, + strand, RNAz p=0.864534

	126-536, gnl\|bosTau2\|chr10 (51623441-51623857)
	126-536, gnl\|canFam2\|chr8 (41940963-41941236)
	126-536, gnl\|echTel1\|scaffold_297403 (105691-105418)
	126-536, gnl\|hg17\|chr14 (64019330-64019592)
	126-536, gnl\|Hg17\|chr14 (64019759-64019349)
	126-536, gnl\|loxAfr1\|scaffold_2075 (68890-69234)
	126-536, gnl\|mm7\|chr12 (74303710-74303936)
	126-536, gnl\|monDom2\|scaffold_8 (78178332-78178574)
	126-536, gnl\|oryCun1\|scaffold_205866 (70026-70262)
	126-536, gnl\|panTro1\|chr15 (63587150-63587412)
	126-536, gnl\|rn3\|chr6 (98947791-98948014)