Non-Coding RNA Search

Pig1-49P07

Sequence:


               
               GAAAAAAAATAATATAAGGTGGTTTACAGGAGCAAGCCAGCAAACCAGGAGCAGGACTAG
GGACCTCGAGGAAGTTCCTGCAGGAACTTGACCTAAAAAATAGAGAAATAGCGCCACCTA
GGCTGCAAGGCCTATTTGGCCGGGCGGGCTGGCTCACCCCTCCCCCACCGTCAGCCGGGA
CAGGCCAGGCCTTTGCTGGGAGAGAAATCGTCACCCCTCAGCACTCCAGCTGGGCAGCAC
CTCCATTCCTCGGGCTTCACCAGGGCTTTCCCAGCAGCCCTGAGGGCAGGGCCCAAGCCA
GGTCCTGGAAAACGCCATGAGGGCCACTCTGTTCTGTCCCAGTCAGCCCAGCTCCCAGAT
CAAGGAGTGTTTCCAAAGGGTAGTAAAGTTATTGCAAAGGGAAGAAGGCGCTTCTCGTCC
CTGTCTGCCCACTGAATCCTGCGGAGCCAGCCCTGGGGTGTGAGGTANCAGAGTGGGATC
TGTGCCCCTGTGCTCTGGACTTGGGAAGAATCGGCTCCTGTCAGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAAAATAATATAAGGTGGTTTACAGGAGCAAGCCAGCAAACCAGGAGCAGGACTAG
GGACCTCGAGGAAGTTCCTGCAGGAACTTGACCTAAAAAATAGAGAAATAGCGCCACCTA
GGCTGCAAGGCCTATTTGGCCGGGCGGGCTGGCTCACCCCTCCCCCACCGTCAGCCGGGA
CAGGCCAGGCCTTTGCTGGGAGAGAAATCGTCACCCCTCAGCACTCCAGCTGGGCAGCAC
CTCCATTCCTCGGGCTTCACCAGGGCTTTCCCAGCAGCCCTGAGGGCAGGGCCCAAGCCA
GGTCCTGGAAAACGCCATGAGGGCCACTCTGTTCTGTCCCAGTCAGCCCAGCTCCCAGAT
CAAGGAGTGTTTCCAAAGGGTAGTAAAGTTATTGCAAAGGGAAGAAGGCGCTTCTCGTCC
CTGTCTGCCCACTGAATCCTGCGGAGCCAGCCCTGGGGTGTGAGGTANCAGAGTGGGATC
TGTGCCCCTGTGCTCTGGACTTGGGAAGAATCGGCTCCTGTCAGGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-280, - strand, RNAz p=0.999538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-280, - strand, RNAz p=0.999538

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               32-202, - strand, RNAmicro p=0.990342

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               32-202, - strand, RNAmicro p=0.990342

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               10-82, MNS40050 Mouse Neurosphere Normalized cDNA library Mus musculus 
(gb|CX224651.1|), blast E-value=5e-18, identity=93.24% 
               

               
               71-141, FB18E10 Fetal brain, Stratagene Homo sapiens cDNA clone FB18E10 
(gb|T02964.1|), blast E-value=6e-21, identity=94.37%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               10-82, MNS40050 Mouse Neurosphere Normalized cDNA library Mus musculus 
(gb|CX224651.1|), blast E-value=5e-18, identity=93.24% 
               

               
               71-141, FB18E10 Fetal brain, Stratagene Homo sapiens cDNA clone FB18E10 
(gb|T02964.1|), blast E-value=6e-21, identity=94.37%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-439, gnl|bosTau2|chr2 (65011072-65010635)
               

               
               2-439, gnl|Hg17|chr2 (219763920-219763515)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-439, gnl|bosTau2|chr2 (65011072-65010635)
               

               
               2-439, gnl|Hg17|chr2 (219763920-219763515)

	10-82, MNS40050 Mouse Neurosphere Normalized cDNA library Mus musculus (gb\|CX224651.1\|), blast E-value=5e-18, identity=93.24%
	71-141, FB18E10 Fetal brain, Stratagene Homo sapiens cDNA clone FB18E10 (gb\|T02964.1\|), blast E-value=6e-21, identity=94.37%

	2-439, gnl\|bosTau2\|chr2 (65011072-65010635)
	2-439, gnl\|Hg17\|chr2 (219763920-219763515)