Non-Coding RNA Search

Pig1-50F15

Sequence:


               
               GGCAAATAGTGTTGACACTCTGTGTTTTGGTCAGTCATCCACCTGCTTAAGCCATTAATG
GAGATGCCCTAATGAAGACTTAAACAAGAAAGGGGAGATTTCCTGGAAAGGTTTTTGTAT
TTGCTATTTCCAAAGAGAAACATCAAAACGGTCCTCTTGGAAAAAAAAAATAAGAACTTT
GCAGGATGTCTTCCTACATTTTTAAAAAAAATTTATTTTATTGAGATATAGTCGATTTAT
AATGTTGTAGTCTTTCTGCATATTTTGAGCTTCGGTATTGTTTTTATTCTGAATTACTTA
CGGGGGAGGAGGAATATATTGTAGTCCTTTTGATACTTAGGGCCGCCCCGAATGAGGGGT
CGGGGAAGGAGGGACTCTCGGGGACTCCTGGGTCTCTGGTTTTGCATGAAGCCGCGGTGG
CAGCTGCGTTGCACCCACCCAGTGTGCAGACTGAATGCATGAGCCCCCTTGCTTGATGCC
CCACATGAAGCCAGACCATGGGGAGGGTTGCAACCAACTTTTGTCGTGGCCTTGTAGTGT
CTTGCTGGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAATAGTGTTGACACTCTGTGTTTTGGTCAGTCATCCACCTGCTTAAGCCATTAATG
GAGATGCCCTAATGAAGACTTAAACAAGAAAGGGGAGATTTCCTGGAAAGGTTTTTGTAT
TTGCTATTTCCAAAGAGAAACATCAAAACGGTCCTCTTGGAAAAAAAAAATAAGAACTTT
GCAGGATGTCTTCCTACATTTTTAAAAAAAATTTATTTTATTGAGATATAGTCGATTTAT
AATGTTGTAGTCTTTCTGCATATTTTGAGCTTCGGTATTGTTTTTATTCTGAATTACTTA
CGGGGGAGGAGGAATATATTGTAGTCCTTTTGATACTTAGGGCCGCCCCGAATGAGGGGT
CGGGGAAGGAGGGACTCTCGGGGACTCCTGGGTCTCTGGTTTTGCATGAAGCCGCGGTGG
CAGCTGCGTTGCACCCACCCAGTGTGCAGACTGAATGCATGAGCCCCCTTGCTTGATGCC
CCACATGAAGCCAGACCATGGGGAGGGTTGCAACCAACTTTTGTCGTGGCCTTGTAGTGT
CTTGCTGGTTCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               86-203, - strand, RNAz p=0.922993
               

               
               323-424, + strand, RNAz p=0.807028

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-203, - strand, RNAz p=0.922993
               

               
               323-424, + strand, RNAz p=0.807028

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               3-203, gnl|bosTau2|chr2 (55947797-55947997)
               

               
               3-203, gnl|canFam2|chr37 (18159161-18159492)
               

               
               3-203, gnl|dasNov1|scaffold_226 (106272-106613)
               

               
               3-203, gnl|echTel1|scaffold_316216 (76337-76059)
               

               
               3-203, gnl|hg17|chr2 (207306574-207306903)
               

               
               3-203, gnl|Hg17|chr2 (207306580-207306781)
               

               
               3-203, gnl|loxAfr1|scaffold_16003 (16187-16510)
               

               
               3-203, gnl|mm7|chr1 (63832044-63832424)
               

               
               3-203, gnl|Mm7|chr1 (63832066-63832297)
               

               
               3-203, gnl|oryCun1|scaffold_178888 (64615-64946)
               

               
               3-203, gnl|panTro1|chr13 (97338986-97339315)
               

               
               3-203, gnl|rheMac2|chr12 (70506095-70506426)
               

               
               3-203, gnl|rn3|chr9 (62395482-62395809)
               


               
               250-552, gnl|bosTau2|chr2 (55947982-55948283)
               

               
               250-552, gnl|Hg17|chr2 (207306766-207307083)
               

               
               250-552, gnl|Mm7|chr1 (63832282-63832600)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-203, gnl|bosTau2|chr2 (55947797-55947997)
               

               
               3-203, gnl|canFam2|chr37 (18159161-18159492)
               

               
               3-203, gnl|dasNov1|scaffold_226 (106272-106613)
               

               
               3-203, gnl|echTel1|scaffold_316216 (76337-76059)
               

               
               3-203, gnl|hg17|chr2 (207306574-207306903)
               

               
               3-203, gnl|Hg17|chr2 (207306580-207306781)
               

               
               3-203, gnl|loxAfr1|scaffold_16003 (16187-16510)
               

               
               3-203, gnl|mm7|chr1 (63832044-63832424)
               

               
               3-203, gnl|Mm7|chr1 (63832066-63832297)
               

               
               3-203, gnl|oryCun1|scaffold_178888 (64615-64946)
               

               
               3-203, gnl|panTro1|chr13 (97338986-97339315)
               

               
               3-203, gnl|rheMac2|chr12 (70506095-70506426)
               

               
               3-203, gnl|rn3|chr9 (62395482-62395809)
               


               
               250-552, gnl|bosTau2|chr2 (55947982-55948283)
               

               
               250-552, gnl|Hg17|chr2 (207306766-207307083)
               

               
               250-552, gnl|Mm7|chr1 (63832282-63832600)

	86-203, - strand, RNAz p=0.922993
	323-424, + strand, RNAz p=0.807028

	3-203, gnl\|bosTau2\|chr2 (55947797-55947997)
	3-203, gnl\|canFam2\|chr37 (18159161-18159492)
	3-203, gnl\|dasNov1\|scaffold_226 (106272-106613)
	3-203, gnl\|echTel1\|scaffold_316216 (76337-76059)
	3-203, gnl\|hg17\|chr2 (207306574-207306903)
	3-203, gnl\|Hg17\|chr2 (207306580-207306781)
	3-203, gnl\|loxAfr1\|scaffold_16003 (16187-16510)
	3-203, gnl\|mm7\|chr1 (63832044-63832424)
	3-203, gnl\|Mm7\|chr1 (63832066-63832297)
	3-203, gnl\|oryCun1\|scaffold_178888 (64615-64946)
	3-203, gnl\|panTro1\|chr13 (97338986-97339315)
	3-203, gnl\|rheMac2\|chr12 (70506095-70506426)
	3-203, gnl\|rn3\|chr9 (62395482-62395809)

	250-552, gnl\|bosTau2\|chr2 (55947982-55948283)
	250-552, gnl\|Hg17\|chr2 (207306766-207307083)
	250-552, gnl\|Mm7\|chr1 (63832282-63832600)