Non-Coding RNA Search

Pig1-50H19

Sequence:


               
               GGTAACCACAACTGAAATCACTCATGTGGGCTCCTGCCAAGACGTCAACCATCATCAAGT
AATTGAACTCAACAGAGAAACCGATAAGCAGGAAACGTGGATTCTGATGGAGCTCCAGAA
GGTTCGCAGGCAGATGGAGCACTGCGAGGGCAGGATGACCCTTAAACACATCCTTCTGGC
TGACCAAGGGTCTTCCCACCACATCACAGTGAAAATAAACGAGCTGAAAAGCATCCAGAA
TGATTCTCAAGCCATTGCCGAAGTTCTCAACCAGCTGAAGGACATGCTGGCCAACTTCAG
AGGTTCGGAAAAATACTGCTATTTGCAGAACGAGATATTTGGATTGTTTCAGAAACTGGA
AAATATCAATGGCGTGACCGATGGTTACTTAAATAGCTTGTGTACAGTGAGGTCCCTGCT
GCAGGCCATTCTCCAGACAGAGGACATGCTGAAGGTGTACGAAGCCAGACTCACCGAAGA
GGAGACGGTCTGCCTGGATCTGGATAAGGTGGAAGCTTACCGCTGCGGACTGAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAACCACAACTGAAATCACTCATGTGGGCTCCTGCCAAGACGTCAACCATCATCAAGT
AATTGAACTCAACAGAGAAACCGATAAGCAGGAAACGTGGATTCTGATGGAGCTCCAGAA
GGTTCGCAGGCAGATGGAGCACTGCGAGGGCAGGATGACCCTTAAACACATCCTTCTGGC
TGACCAAGGGTCTTCCCACCACATCACAGTGAAAATAAACGAGCTGAAAAGCATCCAGAA
TGATTCTCAAGCCATTGCCGAAGTTCTCAACCAGCTGAAGGACATGCTGGCCAACTTCAG
AGGTTCGGAAAAATACTGCTATTTGCAGAACGAGATATTTGGATTGTTTCAGAAACTGGA
AAATATCAATGGCGTGACCGATGGTTACTTAAATAGCTTGTGTACAGTGAGGTCCCTGCT
GCAGGCCATTCTCCAGACAGAGGACATGCTGAAGGTGTACGAAGCCAGACTCACCGAAGA
GGAGACGGTCTGCCTGGATCTGGATAAGGTGGAAGCTTACCGCTGCGGACTGAAGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               110-228, + strand, RNAz p=0.686761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-228, + strand, RNAz p=0.686761

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-228, gnl|bosTau2|chr23 (40086170-40085944)
               

               
               2-228, gnl|Hg17|chr6 (7517073-7517299)
               

               
               2-228, gnl|Mm7|chr13 (37602840-37603066)
               


               
               230-396, gnl|bosTau2|chr23 (40085262-40085096)
               

               
               230-396, gnl|Hg17|chr6 (7519318-7519484)
               

               
               230-396, gnl|Mm7|chr13 (37603991-37604157)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-228, gnl|bosTau2|chr23 (40086170-40085944)
               

               
               2-228, gnl|Hg17|chr6 (7517073-7517299)
               

               
               2-228, gnl|Mm7|chr13 (37602840-37603066)
               


               
               230-396, gnl|bosTau2|chr23 (40085262-40085096)
               

               
               230-396, gnl|Hg17|chr6 (7519318-7519484)
               

               
               230-396, gnl|Mm7|chr13 (37603991-37604157)

	2-228, gnl\|bosTau2\|chr23 (40086170-40085944)
	2-228, gnl\|Hg17\|chr6 (7517073-7517299)
	2-228, gnl\|Mm7\|chr13 (37602840-37603066)

	230-396, gnl\|bosTau2\|chr23 (40085262-40085096)
	230-396, gnl\|Hg17\|chr6 (7519318-7519484)
	230-396, gnl\|Mm7\|chr13 (37603991-37604157)