Non-Coding RNA Search

Pig1-51C16

Sequence:


               
               GCGCAGTACATCTCCACAGCTTCTTACCTGAGCTCTCTCAGCTTCTCATCCAACACCTAC
CCCCCACCCAGCTGGGGCTCCTCCTCAGACCAGCAGCCCTCCAGGGTATCCCACGAACAG
TTCCGGGCTGCCCTGCAGCTGGTGGTCAGCCCAGGAGACCCCAGGGAATACTTGGACAAC
TTTATCAAAATCGGGGAAGGCTCAACCGGCATTGTGTGCATCGCCACTGAGAAACACACG
GGGAAGCAAGTCGCGGTGAAGAAAATGGACCTCCGAAAGCAACAGAGACGAGAGCTGCTA
TTTAATGAGGTTGTGATAATGCGGGATTATCACCATGACAACGTGGTTGACATGTACAAC
AGCTACCTTGTCAGTGATGAGCTCTGGGTGGTCATGGAATTTTTAGAAGGCGGTGCCTTG
ACAGACATCGTTACTCATACCAGAATGAATGAGGAACAGATAGCCACCGTCTGTCTCTCA
GTCCTGAAAGCTCTCTCCTACCTTCACAACCAAGGAGTGATCCACAGGGACATAAAGAGT
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCAGTACATCTCCACAGCTTCTTACCTGAGCTCTCTCAGCTTCTCATCCAACACCTAC
CCCCCACCCAGCTGGGGCTCCTCCTCAGACCAGCAGCCCTCCAGGGTATCCCACGAACAG
TTCCGGGCTGCCCTGCAGCTGGTGGTCAGCCCAGGAGACCCCAGGGAATACTTGGACAAC
TTTATCAAAATCGGGGAAGGCTCAACCGGCATTGTGTGCATCGCCACTGAGAAACACACG
GGGAAGCAAGTCGCGGTGAAGAAAATGGACCTCCGAAAGCAACAGAGACGAGAGCTGCTA
TTTAATGAGGTTGTGATAATGCGGGATTATCACCATGACAACGTGGTTGACATGTACAAC
AGCTACCTTGTCAGTGATGAGCTCTGGGTGGTCATGGAATTTTTAGAAGGCGGTGCCTTG
ACAGACATCGTTACTCATACCAGAATGAATGAGGAACAGATAGCCACCGTCTGTCTCTCA
GTCCTGAAAGCTCTCTCCTACCTTCACAACCAAGGAGTGATCCACAGGGACATAAAGAGT
G

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-162, - strand, RNAz p=0.977129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-162, - strand, RNAz p=0.977129

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               63-176, + strand, RNAmicro p=0.999767
               

               
               59-192, - strand, RNAmicro p=0.997043

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               63-176, + strand, RNAmicro p=0.999767
               

               
               59-192, - strand, RNAmicro p=0.997043

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-311, gnl|bosTau2|chr13 (527706-528013)
               

               
               4-311, gnl|Hg17|chr20 (9494845-9494538)
               

               
               4-311, gnl|Mm7|chr2 (135841895-135841588)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-311, gnl|bosTau2|chr13 (527706-528013)
               

               
               4-311, gnl|Hg17|chr20 (9494845-9494538)
               

               
               4-311, gnl|Mm7|chr2 (135841895-135841588)

	63-176, + strand, RNAmicro p=0.999767
	59-192, - strand, RNAmicro p=0.997043

	4-311, gnl\|bosTau2\|chr13 (527706-528013)
	4-311, gnl\|Hg17\|chr20 (9494845-9494538)
	4-311, gnl\|Mm7\|chr2 (135841895-135841588)