Non-Coding RNA Search

Pig1-51E07

Sequence:


               
               GGTTAAATAAAGAGGGGCTTCACTTGTTTTTAAAAGCATTTATAGAAATCAAGTCAAAGA
GAGAAAATATTTTTCAAAGGCTAACTTCAGAATGATCTCTCTTCCTGGGTAATTGCAGAA
GATGGGCATCTGAACTCTTCCAAATACCAAAAATGCTGTCACAAAAACGAAGAAGTAAAA
AATAGGGCAGACTTTGGGAGACTACAACAATGCAGTCAACACTGAGACAGGTTCCCCAGA
GAAAAGCCTTCTGCTTCAGTGGGCCCCTGCAGAGCAAGTTGCTGGCTACGGAGTTTCAGG
AGAGGGTAAGGGAGGAAGGAGCTCTTCACAGCCCATGATTACGAACTCTGACCCCTCCTC
CCTCATGCTCACCAACTACAAGTACGAATACTGGCTGATCTTGGTAGGACTCAGTGGATA
TCCAGTGTAAATTGCTGAGCCTCGGGAAGACCCAATATAAGACTGGGTGGCAAACTGGTG
TTGGTACTGAGCAGGGGCCACGCTGGCAGAAGTGAGGAGACTGGGCCCAACACTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAAATAAAGAGGGGCTTCACTTGTTTTTAAAAGCATTTATAGAAATCAAGTCAAAGA
GAGAAAATATTTTTCAAAGGCTAACTTCAGAATGATCTCTCTTCCTGGGTAATTGCAGAA
GATGGGCATCTGAACTCTTCCAAATACCAAAAATGCTGTCACAAAAACGAAGAAGTAAAA
AATAGGGCAGACTTTGGGAGACTACAACAATGCAGTCAACACTGAGACAGGTTCCCCAGA
GAAAAGCCTTCTGCTTCAGTGGGCCCCTGCAGAGCAAGTTGCTGGCTACGGAGTTTCAGG
AGAGGGTAAGGGAGGAAGGAGCTCTTCACAGCCCATGATTACGAACTCTGACCCCTCCTC
CCTCATGCTCACCAACTACAAGTACGAATACTGGCTGATCTTGGTAGGACTCAGTGGATA
TCCAGTGTAAATTGCTGAGCCTCGGGAAGACCCAATATAAGACTGGGTGGCAAACTGGTG
TTGGTACTGAGCAGGGGCCACGCTGGCAGAAGTGAGGAGACTGGGCCCAACACTGACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-374, - strand, RNAz p=0.999741
               

               
               420-538, + strand, RNAz p=0.662505

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-374, - strand, RNAz p=0.999741
               

               
               420-538, + strand, RNAz p=0.662505

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               393-466, + strand, RNAmicro p=0.978971

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               393-466, + strand, RNAmicro p=0.978971

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_181358, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_181358, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-538, gnl|bosTau2|chr3 (27187698-27188228)
               

               
               2-538, gnl|Hg17|chr1 (114228567-114228014)
               

               
               2-538, gnl|Mm7|chr3 (103537553-103538094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-538, gnl|bosTau2|chr3 (27187698-27188228)
               

               
               2-538, gnl|Hg17|chr1 (114228567-114228014)
               

               
               2-538, gnl|Mm7|chr3 (103537553-103538094)

	121-374, - strand, RNAz p=0.999741
	420-538, + strand, RNAz p=0.662505

	2-538, gnl\|bosTau2\|chr3 (27187698-27188228)
	2-538, gnl\|Hg17\|chr1 (114228567-114228014)
	2-538, gnl\|Mm7\|chr3 (103537553-103538094)