Non-Coding RNA Search

Pig1-52C24

Sequence:


               
               TGGAGCCCGGCTGCATGATCCGGCATTACCTGAACCTGGACACTTGTCTGTCACAGGCCT
TCGAGATGAGCAGGTACTTCCACATGCGCGGAGGGAATCTGCCTGAGGACATATCTACCT
TCGGCTCAGATCTCTTCTTTGCTCGCCACCTCCAGCGCCACAACCATCTGCTCTGGCTGT
CGCCCACCTCTCGCCCTGACCTGGGTGGGAAGGAGGCCGACGACAACCGGCTCGTCATGG
AGTTCGATGACCAGGCCCCTGTGGAGATCAACAGTTCAGGCTGTTACTCCACAGTGTGCG
TGGAGCTGGACATTCAGAACCTGGCCGTCAACACCATCCTGCAGTCTCACCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCCCGGCTGCATGATCCGGCATTACCTGAACCTGGACACTTGTCTGTCACAGGCCT
TCGAGATGAGCAGGTACTTCCACATGCGCGGAGGGAATCTGCCTGAGGACATATCTACCT
TCGGCTCAGATCTCTTCTTTGCTCGCCACCTCCAGCGCCACAACCATCTGCTCTGGCTGT
CGCCCACCTCTCGCCCTGACCTGGGTGGGAAGGAGGCCGACGACAACCGGCTCGTCATGG
AGTTCGATGACCAGGCCCCTGTGGAGATCAACAGTTCAGGCTGTTACTCCACAGTGTGCG
TGGAGCTGGACATTCAGAACCTGGCCGTCAACACCATCCTGCAGTCTCACCACG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               185-303, + strand, RNAz p=0.86223

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-303, + strand, RNAz p=0.86223

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               70-303, gnl|bosTau2|chr17 (23068697-23068465)
               

               
               70-303, gnl|Hg17|chr12 (131829337-131829105)
               

               
               70-303, gnl|Mm7|chr5 (109491601-109491837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-303, gnl|bosTau2|chr17 (23068697-23068465)
               

               
               70-303, gnl|Hg17|chr12 (131829337-131829105)
               

               
               70-303, gnl|Mm7|chr5 (109491601-109491837)

	70-303, gnl\|bosTau2\|chr17 (23068697-23068465)
	70-303, gnl\|Hg17\|chr12 (131829337-131829105)
	70-303, gnl\|Mm7\|chr5 (109491601-109491837)