Non-Coding RNA Search

Pig1-52G03

Sequence:


               
               GGGTTCAGGAACCACCTCCCCTGGGATTACCTGTTTAAAGCTGTATATCCGTGTACACAT
TTCCTAGGAAGAGGATCCAAAGCTTTTATCAGCATGTCAGAGGGATCTGAGCAACCTCAA
TTTCAGGGCTAGGGAGGTAGAAAGGAGCAGATGGCCCACAACTAGCGGTGATGGAGGCGG
GCTCTGGTGAGTGGCACTGCGGACGCCGAGTTGCTTTGGAAGTGTGGGTGCTGCTGACAA
GCTCTAGACCCCAGGTCACCCTTGCCCCATTCTCCACCCTACGCTAAGCCTTTGGCTCCC
AAAGGCCACTGGACCAAAGGTTATTCTGGAGAATGTGAAGGTCAAGGGCTTGACTGGCTG
CTAAACTTCTGTCCAGTTTCTGCTGGCAGGTCTGTTATTTTTGCCTGCACCTTGGACACT
AGAGTTGTTTTTGGCAACAGAAAATCCAAATGATGGAGAAATTTGGTGGGAAAGGGGAAA
AGTTTGCAAAACAGCATTATTGCAATTGAGTGCTTTTCCTTAAAAAAAAAAAAAAAAAAA
AAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTCAGGAACCACCTCCCCTGGGATTACCTGTTTAAAGCTGTATATCCGTGTACACAT
TTCCTAGGAAGAGGATCCAAAGCTTTTATCAGCATGTCAGAGGGATCTGAGCAACCTCAA
TTTCAGGGCTAGGGAGGTAGAAAGGAGCAGATGGCCCACAACTAGCGGTGATGGAGGCGG
GCTCTGGTGAGTGGCACTGCGGACGCCGAGTTGCTTTGGAAGTGTGGGTGCTGCTGACAA
GCTCTAGACCCCAGGTCACCCTTGCCCCATTCTCCACCCTACGCTAAGCCTTTGGCTCCC
AAAGGCCACTGGACCAAAGGTTATTCTGGAGAATGTGAAGGTCAAGGGCTTGACTGGCTG
CTAAACTTCTGTCCAGTTTCTGCTGGCAGGTCTGTTATTTTTGCCTGCACCTTGGACACT
AGAGTTGTTTTTGGCAACAGAAAATCCAAATGATGGAGAAATTTGGTGGGAAAGGGGAAA
AGTTTGCAAAACAGCATTATTGCAATTGAGTGCTTTTCCTTAAAAAAAAAAAAAAAAAAA
AAGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               274-385, - strand, RNAz p=0.681885

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-385, - strand, RNAz p=0.681885

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               161-543, gnl|bosTau2|chr25 (5319807-5320192)
               

               
               161-543, gnl|canFam2|chr5 (24362443-24361898)
               

               
               161-543, gnl|dasNov1|scaffold_1033 (51509-52084)
               

               
               161-543, gnl|hg17|chr11 (111107499-111108067)
               

               
               161-543, gnl|Hg17|chr11 (111108090-111107751)
               

               
               161-543, gnl|loxAfr1|scaffold_6637 (10003-9398)
               

               
               161-543, gnl|mm7|chr9 (50867589-50867143)
               

               
               161-543, gnl|oryCun1|scaffold_211749 (51889-52395)
               

               
               161-543, gnl|panTro1|chr9 (113097520-113098088)
               

               
               161-543, gnl|rheMac2|chr14 (110195576-110196142)
               

               
               161-543, gnl|rn3|chr8 (54255771-54255308)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-543, gnl|bosTau2|chr25 (5319807-5320192)
               

               
               161-543, gnl|canFam2|chr5 (24362443-24361898)
               

               
               161-543, gnl|dasNov1|scaffold_1033 (51509-52084)
               

               
               161-543, gnl|hg17|chr11 (111107499-111108067)
               

               
               161-543, gnl|Hg17|chr11 (111108090-111107751)
               

               
               161-543, gnl|loxAfr1|scaffold_6637 (10003-9398)
               

               
               161-543, gnl|mm7|chr9 (50867589-50867143)
               

               
               161-543, gnl|oryCun1|scaffold_211749 (51889-52395)
               

               
               161-543, gnl|panTro1|chr9 (113097520-113098088)
               

               
               161-543, gnl|rheMac2|chr14 (110195576-110196142)
               

               
               161-543, gnl|rn3|chr8 (54255771-54255308)

	161-543, gnl\|bosTau2\|chr25 (5319807-5320192)
	161-543, gnl\|canFam2\|chr5 (24362443-24361898)
	161-543, gnl\|dasNov1\|scaffold_1033 (51509-52084)
	161-543, gnl\|hg17\|chr11 (111107499-111108067)
	161-543, gnl\|Hg17\|chr11 (111108090-111107751)
	161-543, gnl\|loxAfr1\|scaffold_6637 (10003-9398)
	161-543, gnl\|mm7\|chr9 (50867589-50867143)
	161-543, gnl\|oryCun1\|scaffold_211749 (51889-52395)
	161-543, gnl\|panTro1\|chr9 (113097520-113098088)
	161-543, gnl\|rheMac2\|chr14 (110195576-110196142)
	161-543, gnl\|rn3\|chr8 (54255771-54255308)