Non-Coding RNA Search

Pig1-52J24

Sequence:


               
               GCAAAACTAATCATTTGCGAGCTGTGGGGGCTCCAATTCTCGGCCGTCAATTATCGTGGT
TCTGTTTTAAAAGAAGATAGCTAATTTAGGGCCGAATTCTTAAGCCTGTACCGGATATGA
GATTCCCTTTGTTCAGAAAAGCGTAAATAAGATCCTTGGAGCTGTGTCTGTGGAGGGGCG
GCTGCCTGGGAGCCTCGCTGTGCTGGGGCTGGGAAGTGGATTCCGAGCTCTGTCCTTGGT
CCTACGCAGCTGACTTCGCCTTCTGGGCGAGGGGGAACCCCTTTGCATCCGCAGGGCTTC
AGAGCCACCCCAGTAGCCAACTCCGCTACGTAGCCTTCACCCACTTCCTTACTACCCTCC
CCCCACCCTTTTTCTCGAATAGCTATTGTTAAACTGACGCCTGGAGAAAGATGGGGATGA
GACGCCGGGCAGACGCTTGCTTCATTTTAACTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAACTAATCATTTGCGAGCTGTGGGGGCTCCAATTCTCGGCCGTCAATTATCGTGGT
TCTGTTTTAAAAGAAGATAGCTAATTTAGGGCCGAATTCTTAAGCCTGTACCGGATATGA
GATTCCCTTTGTTCAGAAAAGCGTAAATAAGATCCTTGGAGCTGTGTCTGTGGAGGGGCG
GCTGCCTGGGAGCCTCGCTGTGCTGGGGCTGGGAAGTGGATTCCGAGCTCTGTCCTTGGT
CCTACGCAGCTGACTTCGCCTTCTGGGCGAGGGGGAACCCCTTTGCATCCGCAGGGCTTC
AGAGCCACCCCAGTAGCCAACTCCGCTACGTAGCCTTCACCCACTTCCTTACTACCCTCC
CCCCACCCTTTTTCTCGAATAGCTATTGTTAAACTGACGCCTGGAGAAAGATGGGGATGA
GACGCCGGGCAGACGCTTGCTTCATTTTAACTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               202-355, - strand, RNAz p=0.997229
               

               
               244-338, - strand, RNAz p=0.872539

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-355, - strand, RNAz p=0.997229
               

               
               244-338, - strand, RNAz p=0.872539

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-455, gnl|bosTau2|chr8 (13169787-13169319)
               

               
               2-455, gnl|canFam2|chr11 (45674670-45675450)
               

               
               2-455, gnl|dasNov1|scaffold_42487 (38369-37576)
               

               
               2-455, gnl|echTel1|scaffold_324729 (74652-73882)
               

               
               2-455, gnl|hg17|chr9 (23814456-23815232)
               

               
               2-455, gnl|Hg17|chr9 (23815193-23814747)
               

               
               2-455, gnl|mm7|chr4 (90767187-90767957)
               

               
               2-455, gnl|Mm7|chr4 (90767922-90767472)
               

               
               2-455, gnl|monDom2|scaffold_19 (20256226-20257038)
               

               
               2-455, gnl|panTro1|chr11 (24109889-24110665)
               

               
               2-455, gnl|rheMac2|chr15 (53238284-53237497)
               

               
               2-455, gnl|rn3|chr5 (111308378-111309146)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-455, gnl|bosTau2|chr8 (13169787-13169319)
               

               
               2-455, gnl|canFam2|chr11 (45674670-45675450)
               

               
               2-455, gnl|dasNov1|scaffold_42487 (38369-37576)
               

               
               2-455, gnl|echTel1|scaffold_324729 (74652-73882)
               

               
               2-455, gnl|hg17|chr9 (23814456-23815232)
               

               
               2-455, gnl|Hg17|chr9 (23815193-23814747)
               

               
               2-455, gnl|mm7|chr4 (90767187-90767957)
               

               
               2-455, gnl|Mm7|chr4 (90767922-90767472)
               

               
               2-455, gnl|monDom2|scaffold_19 (20256226-20257038)
               

               
               2-455, gnl|panTro1|chr11 (24109889-24110665)
               

               
               2-455, gnl|rheMac2|chr15 (53238284-53237497)
               

               
               2-455, gnl|rn3|chr5 (111308378-111309146)

	202-355, - strand, RNAz p=0.997229
	244-338, - strand, RNAz p=0.872539

	2-455, gnl\|bosTau2\|chr8 (13169787-13169319)
	2-455, gnl\|canFam2\|chr11 (45674670-45675450)
	2-455, gnl\|dasNov1\|scaffold_42487 (38369-37576)
	2-455, gnl\|echTel1\|scaffold_324729 (74652-73882)
	2-455, gnl\|hg17\|chr9 (23814456-23815232)
	2-455, gnl\|Hg17\|chr9 (23815193-23814747)
	2-455, gnl\|mm7\|chr4 (90767187-90767957)
	2-455, gnl\|Mm7\|chr4 (90767922-90767472)
	2-455, gnl\|monDom2\|scaffold_19 (20256226-20257038)
	2-455, gnl\|panTro1\|chr11 (24109889-24110665)
	2-455, gnl\|rheMac2\|chr15 (53238284-53237497)
	2-455, gnl\|rn3\|chr5 (111308378-111309146)