Non-Coding RNA Search

Pig1-52L15

Sequence:


               
               GCGGACGCGTGGGCGGACGCGTGGGGTTTTGGAATTCAGTTTCATTCAACAATTATTTAT
TGAATACATTTTTAAAGGCAGTGTGATTACCATTTAGAAGGTGCTGGTCCATTCTGACAT
TTCATTTGAAGTTCTCCAATTTCTATTTCTATCATCTGTTTCGAAGCTTATATAGGAGCA
GCTTGATATACAAACTGAGAATCAGGTTTTATCCCTGTTAAGTTTTTGAGAGAAAAAAGA
TCTCTCGTGGCATTTGGGAATTACATGGCAACATCTGTGTGCTGGTATACCAAGAACATA
GCAAGTGCTTGTTACACTGTCTTCTAACCTAAGCACCCACTCAACAGTGGCTGCTACAGA
TGTGAAGGATACATTGGCATCCACTTCTCCCTAGTGTTTCAGTTTTTTCGTTGAGTACTT
ATGTATTTTCCATGTAGCTTCGCTGCCAAGTCTCACACCTAAAGGGTCAATCCTTCACTA
TATGTAGTTTAAGTAAAATTCCACAACTACTTCCAAACTGATGCCTATACCAAGGGATTT
TCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGCGGACGCGTGGGGTTTTGGAATTCAGTTTCATTCAACAATTATTTAT
TGAATACATTTTTAAAGGCAGTGTGATTACCATTTAGAAGGTGCTGGTCCATTCTGACAT
TTCATTTGAAGTTCTCCAATTTCTATTTCTATCATCTGTTTCGAAGCTTATATAGGAGCA
GCTTGATATACAAACTGAGAATCAGGTTTTATCCCTGTTAAGTTTTTGAGAGAAAAAAGA
TCTCTCGTGGCATTTGGGAATTACATGGCAACATCTGTGTGCTGGTATACCAAGAACATA
GCAAGTGCTTGTTACACTGTCTTCTAACCTAAGCACCCACTCAACAGTGGCTGCTACAGA
TGTGAAGGATACATTGGCATCCACTTCTCCCTAGTGTTTCAGTTTTTTCGTTGAGTACTT
ATGTATTTTCCATGTAGCTTCGCTGCCAAGTCTCACACCTAAAGGGTCAATCCTTCACTA
TATGTAGTTTAAGTAAAATTCCACAACTACTTCCAAACTGATGCCTATACCAAGGGATTT
TCAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               361-479, - strand, RNAz p=0.506881

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-479, - strand, RNAz p=0.506881

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               26-545, gnl|bosTau2|chr20 (25156500-25155976)
               

               
               26-545, gnl|canFam2|chr19 (18015386-18014865)
               

               
               26-545, gnl|dasNov1|scaffold_6681 (39291-38774)
               

               
               26-545, gnl|echTel1|scaffold_186212 (1752-1228)
               

               
               26-545, gnl|hg17|chr4 (126937275-126937786)
               

               
               26-545, gnl|Hg17|chr4 (126937433-126937944)
               

               
               26-545, gnl|loxAfr1|scaffold_68150 (11461-11975)
               

               
               26-545, gnl|mm7|chr3 (38952819-38953342)
               

               
               26-545, gnl|oryCun1|scaffold_211037 (166870-166307)
               

               
               26-545, gnl|panTro1|chr3 (143792737-143793250)
               

               
               26-545, gnl|rheMac2|chr5 (117991794-117992291)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-545, gnl|bosTau2|chr20 (25156500-25155976)
               

               
               26-545, gnl|canFam2|chr19 (18015386-18014865)
               

               
               26-545, gnl|dasNov1|scaffold_6681 (39291-38774)
               

               
               26-545, gnl|echTel1|scaffold_186212 (1752-1228)
               

               
               26-545, gnl|hg17|chr4 (126937275-126937786)
               

               
               26-545, gnl|Hg17|chr4 (126937433-126937944)
               

               
               26-545, gnl|loxAfr1|scaffold_68150 (11461-11975)
               

               
               26-545, gnl|mm7|chr3 (38952819-38953342)
               

               
               26-545, gnl|oryCun1|scaffold_211037 (166870-166307)
               

               
               26-545, gnl|panTro1|chr3 (143792737-143793250)
               

               
               26-545, gnl|rheMac2|chr5 (117991794-117992291)

	26-545, gnl\|bosTau2\|chr20 (25156500-25155976)
	26-545, gnl\|canFam2\|chr19 (18015386-18014865)
	26-545, gnl\|dasNov1\|scaffold_6681 (39291-38774)
	26-545, gnl\|echTel1\|scaffold_186212 (1752-1228)
	26-545, gnl\|hg17\|chr4 (126937275-126937786)
	26-545, gnl\|Hg17\|chr4 (126937433-126937944)
	26-545, gnl\|loxAfr1\|scaffold_68150 (11461-11975)
	26-545, gnl\|mm7\|chr3 (38952819-38953342)
	26-545, gnl\|oryCun1\|scaffold_211037 (166870-166307)
	26-545, gnl\|panTro1\|chr3 (143792737-143793250)
	26-545, gnl\|rheMac2\|chr5 (117991794-117992291)