Non-Coding RNA Search

Pig1-53G12

Sequence:


               
               GGGCCTGATGGAGCATGGAAGCAGATGTTCCAGGAGAGGAGCAGCCGGATGCTGCAGGCC
TTGTCTCCGAAGCAGAGCCCCGTGAGCAGCCCCACCAGGAGCCGTTCCCCTTCCCGCTCC
CCGTCGCCCACCTTCTCATGGCTCCCCAACAAAACCTCACCCCCCTCGTCGCCCAAAGCA
GCCTCGGCCTCCATCAGCAGCATGAGCGAGGGGGATGAGGATGAGAAGTAAAGGCTGCTG
GCAGACGGCGAGAGCCACACCACGCAGGCTGGGGAGGAGGGCGGGAGCACTGGGGACGCC
TGGGTGGTGTTGGAAGGGTAACAGGTGCAGGAGCTGCAGCTCAGCAGGGAGACCCTGAGT
TCTGCTAAGGGAAGGCCTCAGGACCAGCTCTCCCTCCGTCTCCACTTAGCCCAAGACTCG
GGCTCTGCATGGAGGTTTCCAGACGGACAACCTATTCAAACCTTCTTAGCATCATCTAGA
GTCACTCTACTTTAACCTTGCTAAGGCAAGATGCAGAGCACCCTGGGAGACTTGCATTGA
GGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCTGATGGAGCATGGAAGCAGATGTTCCAGGAGAGGAGCAGCCGGATGCTGCAGGCC
TTGTCTCCGAAGCAGAGCCCCGTGAGCAGCCCCACCAGGAGCCGTTCCCCTTCCCGCTCC
CCGTCGCCCACCTTCTCATGGCTCCCCAACAAAACCTCACCCCCCTCGTCGCCCAAAGCA
GCCTCGGCCTCCATCAGCAGCATGAGCGAGGGGGATGAGGATGAGAAGTAAAGGCTGCTG
GCAGACGGCGAGAGCCACACCACGCAGGCTGGGGAGGAGGGCGGGAGCACTGGGGACGCC
TGGGTGGTGTTGGAAGGGTAACAGGTGCAGGAGCTGCAGCTCAGCAGGGAGACCCTGAGT
TCTGCTAAGGGAAGGCCTCAGGACCAGCTCTCCCTCCGTCTCCACTTAGCCCAAGACTCG
GGCTCTGCATGGAGGTTTCCAGACGGACAACCTATTCAAACCTTCTTAGCATCATCTAGA
GTCACTCTACTTTAACCTTGCTAAGGCAAGATGCAGAGCACCCTGGGAGACTTGCATTGA
GGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               97-367, - strand, RNAz p=0.999422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-367, - strand, RNAz p=0.999422

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               145-258, - strand, RNAmicro p=0.999894

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               145-258, - strand, RNAmicro p=0.999894

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-541, gnl|bosTau2|chr9 (34670712-34670187)
               

               
               18-541, gnl|Hg17|chrX (24340280-24339771)
               

               
               18-541, gnl|Mm7|chrX (89132870-89133347)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-541, gnl|bosTau2|chr9 (34670712-34670187)
               

               
               18-541, gnl|Hg17|chrX (24340280-24339771)
               

               
               18-541, gnl|Mm7|chrX (89132870-89133347)

	18-541, gnl\|bosTau2\|chr9 (34670712-34670187)
	18-541, gnl\|Hg17\|chrX (24340280-24339771)
	18-541, gnl\|Mm7\|chrX (89132870-89133347)