Non-Coding RNA Search

Pig1-54F13

Sequence:


               
               ACAGACCTATGGCAAACCACGTGATCTGTGACTTTCCTACCTTTGAGCTGCACCTGGTTT
GTACCCAGATATATTTGTCCTCTGAGAAAGGATCCAATCAGTTAGCAAGCAGAATAGTCT
CCTTCCCTGTGGTTCTGCCTCACTGGTCCTGGCATAGCCACTAGTAAGGCCCTAGAGGCA
CCTAGCAGAGCTTACCCCTGGGGTGGAGAACCCACTTGCTGCTTATCCTAGGTTTCCACA
GTTCTCTCTGGGTTTGACTACAAGGTTCTCCTTGAGGGAGTTGCAGGTTTTAGTCCCACC
TCTGAGCTTTCACATGTGTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGACCTATGGCAAACCACGTGATCTGTGACTTTCCTACCTTTGAGCTGCACCTGGTTT
GTACCCAGATATATTTGTCCTCTGAGAAAGGATCCAATCAGTTAGCAAGCAGAATAGTCT
CCTTCCCTGTGGTTCTGCCTCACTGGTCCTGGCATAGCCACTAGTAAGGCCCTAGAGGCA
CCTAGCAGAGCTTACCCCTGGGGTGGAGAACCCACTTGCTGCTTATCCTAGGTTTCCACA
GTTCTCTCTGGGTTTGACTACAAGGTTCTCCTTGAGGGAGTTGCAGGTTTTAGTCCCACC
TCTGAGCTTTCACATGTGTTATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               110-222, + strand, RNAz p=0.806729
               

               
               112-227, - strand, RNAz p=0.985403

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-222, + strand, RNAz p=0.806729
               

               
               112-227, - strand, RNAz p=0.985403

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-319, gnl|bosTau2|chr18 (45758351-45758676)
               

               
               1-319, gnl|canFam2|chr1 (115603600-115603097)
               

               
               1-319, gnl|dasNov1|scaffold_103854 (36484-35968)
               

               
               1-319, gnl|hg17|chr19 (46464992-46465514)
               

               
               1-319, gnl|Hg17|chr19 (46465266-46465587)
               

               
               1-319, gnl|loxAfr1|scaffold_15630 (2775-3269)
               

               
               1-319, gnl|mm7|chr7 (22526549-22526004)
               

               
               1-319, gnl|Mm7|chr7 (22526247-22525961)
               

               
               1-319, gnl|oryCun1|scaffold_189143 (71403-70891)
               

               
               1-319, gnl|panTro1|chr20 (43449183-43449705)
               

               
               1-319, gnl|rheMac2|chr19 (47657680-47658200)
               

               
               1-319, gnl|rn3|chr1 (81036646-81036146)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-319, gnl|bosTau2|chr18 (45758351-45758676)
               

               
               1-319, gnl|canFam2|chr1 (115603600-115603097)
               

               
               1-319, gnl|dasNov1|scaffold_103854 (36484-35968)
               

               
               1-319, gnl|hg17|chr19 (46464992-46465514)
               

               
               1-319, gnl|Hg17|chr19 (46465266-46465587)
               

               
               1-319, gnl|loxAfr1|scaffold_15630 (2775-3269)
               

               
               1-319, gnl|mm7|chr7 (22526549-22526004)
               

               
               1-319, gnl|Mm7|chr7 (22526247-22525961)
               

               
               1-319, gnl|oryCun1|scaffold_189143 (71403-70891)
               

               
               1-319, gnl|panTro1|chr20 (43449183-43449705)
               

               
               1-319, gnl|rheMac2|chr19 (47657680-47658200)
               

               
               1-319, gnl|rn3|chr1 (81036646-81036146)

	110-222, + strand, RNAz p=0.806729
	112-227, - strand, RNAz p=0.985403

	1-319, gnl\|bosTau2\|chr18 (45758351-45758676)
	1-319, gnl\|canFam2\|chr1 (115603600-115603097)
	1-319, gnl\|dasNov1\|scaffold_103854 (36484-35968)
	1-319, gnl\|hg17\|chr19 (46464992-46465514)
	1-319, gnl\|Hg17\|chr19 (46465266-46465587)
	1-319, gnl\|loxAfr1\|scaffold_15630 (2775-3269)
	1-319, gnl\|mm7\|chr7 (22526549-22526004)
	1-319, gnl\|Mm7\|chr7 (22526247-22525961)
	1-319, gnl\|oryCun1\|scaffold_189143 (71403-70891)
	1-319, gnl\|panTro1\|chr20 (43449183-43449705)
	1-319, gnl\|rheMac2\|chr19 (47657680-47658200)
	1-319, gnl\|rn3\|chr1 (81036646-81036146)