Non-Coding RNA Search

Pig1-55D07

Sequence:


               
               GATTAACAGCTATCTTTCTCTTCCAGCCGATCTTACCAAGATGCACATCGCAGACAACCC
TCATCCACAGGTGACTCATGTGTCTTCTAGTCAGTCTGGTTGTAGCATCGCCAGTGACTC
TGGGAGCAGCAGTTTATCTGATATTTATCAGGCTACAGAAAGTGAGGTAGGAGATGTAGA
TTTAACACGTCTTCCAGAAGGACCTGTTGATTCTGAAGATGAAGAAGAGGAAGATGAAGA
GATTGATCGAACAGATCCATTGCAGGGGCGAGATCTTGTTCGAGAATGTCTTGAGAAAGA
ACCTGCAGATAAAACTGATGATGACATTGAACAATTATTGGAGTTTATGCACCAGCTTCC
TGCTTTCGCAAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCAGTGATGATTTTTGA
AGTAGTAGAGCAGGCTGGAGCTATTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTA
TGTTATTTTAAACGGCACTGTAGAAATTAGTCATCCCGATGGAAAAGTTGAAAATCTCTT
TATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTAACAGCTATCTTTCTCTTCCAGCCGATCTTACCAAGATGCACATCGCAGACAACCC
TCATCCACAGGTGACTCATGTGTCTTCTAGTCAGTCTGGTTGTAGCATCGCCAGTGACTC
TGGGAGCAGCAGTTTATCTGATATTTATCAGGCTACAGAAAGTGAGGTAGGAGATGTAGA
TTTAACACGTCTTCCAGAAGGACCTGTTGATTCTGAAGATGAAGAAGAGGAAGATGAAGA
GATTGATCGAACAGATCCATTGCAGGGGCGAGATCTTGTTCGAGAATGTCTTGAGAAAGA
ACCTGCAGATAAAACTGATGATGACATTGAACAATTATTGGAGTTTATGCACCAGCTTCC
TGCTTTCGCAAACATGACCATGTCTGTAAGGAGAGAACTCTGCTCAGTGATGATTTTTGA
AGTAGTAGAGCAGGCTGGAGCTATTATTCTTGAAGATGGGCAAGAGCTTGACTCATGGTA
TGTTATTTTAAACGGCACTGTAGAAATTAGTCATCCCGATGGAAAAGTTGAAAATCTCTT
TATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WYF9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WYF9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               13-131, + strand, RNAz p=0.62227

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-131, + strand, RNAz p=0.62227

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               13-152, gnl|bosTau2|chr7 (18649635-18649774)
               

               
               13-152, gnl|canFam2|chr11 (22872360-22872494)
               

               
               13-152, gnl|danRer3|chrNA (177112864-177112742)
               

               
               13-152, gnl|dasNov1|scaffold_72017 (1919-1785)
               

               
               13-152, gnl|echTel1|scaffold_277141 (6267-6134)
               

               
               13-152, gnl|fr1|chrUn (171018158-171018279)
               

               
               13-152, gnl|galGal2|chr13 (15500978-15501098)
               

               
               13-152, gnl|hg17|chr5 (130884966-130885100)
               

               
               13-152, gnl|Hg17|chr5 (130885118-130884981)
               

               
               13-152, gnl|loxAfr1|scaffold_75202 (8426-8559)
               

               
               13-152, gnl|mm7|chr11 (54567691-54567560)
               

               
               13-152, gnl|Mm7|chr11 (54567538-54567677)
               

               
               13-152, gnl|monDom2|scaffold_6 (95145124-95144985)
               

               
               13-152, gnl|oryCun1|scaffold_173063 (130762-130877)
               

               
               13-152, gnl|panTro1|chr4 (137223237-137223371)
               

               
               13-152, gnl|rheMac2|chr6 (127946596-127946730)
               

               
               13-152, gnl|rn3|chr10 (40028485-40028355)
               

               
               13-152, gnl|tetNig1|chr7 (8284620-8284741)
               

               
               13-152, gnl|xenTro1|scaffold_10 (42163-42029)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-152, gnl|bosTau2|chr7 (18649635-18649774)
               

               
               13-152, gnl|canFam2|chr11 (22872360-22872494)
               

               
               13-152, gnl|danRer3|chrNA (177112864-177112742)
               

               
               13-152, gnl|dasNov1|scaffold_72017 (1919-1785)
               

               
               13-152, gnl|echTel1|scaffold_277141 (6267-6134)
               

               
               13-152, gnl|fr1|chrUn (171018158-171018279)
               

               
               13-152, gnl|galGal2|chr13 (15500978-15501098)
               

               
               13-152, gnl|hg17|chr5 (130884966-130885100)
               

               
               13-152, gnl|Hg17|chr5 (130885118-130884981)
               

               
               13-152, gnl|loxAfr1|scaffold_75202 (8426-8559)
               

               
               13-152, gnl|mm7|chr11 (54567691-54567560)
               

               
               13-152, gnl|Mm7|chr11 (54567538-54567677)
               

               
               13-152, gnl|monDom2|scaffold_6 (95145124-95144985)
               

               
               13-152, gnl|oryCun1|scaffold_173063 (130762-130877)
               

               
               13-152, gnl|panTro1|chr4 (137223237-137223371)
               

               
               13-152, gnl|rheMac2|chr6 (127946596-127946730)
               

               
               13-152, gnl|rn3|chr10 (40028485-40028355)
               

               
               13-152, gnl|tetNig1|chr7 (8284620-8284741)
               

               
               13-152, gnl|xenTro1|scaffold_10 (42163-42029)

	13-152, gnl\|bosTau2\|chr7 (18649635-18649774)
	13-152, gnl\|canFam2\|chr11 (22872360-22872494)
	13-152, gnl\|danRer3\|chrNA (177112864-177112742)
	13-152, gnl\|dasNov1\|scaffold_72017 (1919-1785)
	13-152, gnl\|echTel1\|scaffold_277141 (6267-6134)
	13-152, gnl\|fr1\|chrUn (171018158-171018279)
	13-152, gnl\|galGal2\|chr13 (15500978-15501098)
	13-152, gnl\|hg17\|chr5 (130884966-130885100)
	13-152, gnl\|Hg17\|chr5 (130885118-130884981)
	13-152, gnl\|loxAfr1\|scaffold_75202 (8426-8559)
	13-152, gnl\|mm7\|chr11 (54567691-54567560)
	13-152, gnl\|Mm7\|chr11 (54567538-54567677)
	13-152, gnl\|monDom2\|scaffold_6 (95145124-95144985)
	13-152, gnl\|oryCun1\|scaffold_173063 (130762-130877)
	13-152, gnl\|panTro1\|chr4 (137223237-137223371)
	13-152, gnl\|rheMac2\|chr6 (127946596-127946730)
	13-152, gnl\|rn3\|chr10 (40028485-40028355)
	13-152, gnl\|tetNig1\|chr7 (8284620-8284741)
	13-152, gnl\|xenTro1\|scaffold_10 (42163-42029)