Non-Coding RNA Search

Pig1-55K08

Sequence:


               
               GAAGCTATCCAAATTTTTGAGAATTCCAGAAGCTAGTATTTTGTGAGAAGGGTGAACACA
TTTTCCACTTTTAAAGAAATAACAACTAGGTATGTCAGTCCCAGAAAGCATTAAATGGAT
CTAATTCCTTGAGAGGGATTTTTCCCTTCATTTCAGTAATTTGGTAAGAGAAATTTTAAA
ATGGCCTTTCGAGCATTTTAGCTTGTTTTGCATGTGTTTGTATGCAAGATTTGCCAGATT
TTCCCAGATTGTGTTTGTGTAGAAAATTGAGTTTTCTAAACAACTCACCACTTCCCTTTC
CTAGGAGACAATTAGACCAAATTCAGTAATCCCTGTAGTTCTTTGTAAATTACAGGCCCT
TGCTGAGGAAGTGAGTTTCACTTTCTCAGGGATAGGACATTTCACATCTACCTTTGAGTA
TCTGCCCCACTCCAAAAAATTTCGAGTTAACAATGTGAATACAGCTTTTGTCACCAAAAC
AGTTGTTTTACCAATAAAACACACAAGTCAAAAAAGCTTTGTCGAATGAACGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTATCCAAATTTTTGAGAATTCCAGAAGCTAGTATTTTGTGAGAAGGGTGAACACA
TTTTCCACTTTTAAAGAAATAACAACTAGGTATGTCAGTCCCAGAAAGCATTAAATGGAT
CTAATTCCTTGAGAGGGATTTTTCCCTTCATTTCAGTAATTTGGTAAGAGAAATTTTAAA
ATGGCCTTTCGAGCATTTTAGCTTGTTTTGCATGTGTTTGTATGCAAGATTTGCCAGATT
TTCCCAGATTGTGTTTGTGTAGAAAATTGAGTTTTCTAAACAACTCACCACTTCCCTTTC
CTAGGAGACAATTAGACCAAATTCAGTAATCCCTGTAGTTCTTTGTAAATTACAGGCCCT
TGCTGAGGAAGTGAGTTTCACTTTCTCAGGGATAGGACATTTCACATCTACCTTTGAGTA
TCTGCCCCACTCCAAAAAATTTCGAGTTAACAATGTGAATACAGCTTTTGTCACCAAAAC
AGTTGTTTTACCAATAAAACACACAAGTCAAAAAAGCTTTGTCGAATGAACGTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               296-412, - strand, RNAz p=0.950602

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-412, - strand, RNAz p=0.950602

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-534, gnl|bosTau2|chr26 (11926518-11925995)
               

               
               1-534, gnl|canFam2|chr28 (15457879-15458927)
               

               
               1-534, gnl|dasNov1|scaffold_23763 (47600-48659)
               

               
               1-534, gnl|hg17|chr10 (101278105-101279198)
               

               
               1-534, gnl|Hg17|chr10 (101278774-101278252)
               

               
               1-534, gnl|loxAfr1|scaffold_2838 (21546-20474)
               

               
               1-534, gnl|mm7|chr19 (43501764-43502899)
               

               
               1-534, gnl|Mm7|chr19 (43502466-43501907)
               

               
               1-534, gnl|monDom2|scaffold_14 (22670422-22669387)
               

               
               1-534, gnl|oryCun1|scaffold_194499 (13300-14394)
               

               
               1-534, gnl|panTro1|chr8 (103022933-103024026)
               

               
               1-534, gnl|rheMac2|chr9 (99137797-99138877)
               

               
               1-534, gnl|rn3|chr1 (247343403-247342235)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-534, gnl|bosTau2|chr26 (11926518-11925995)
               

               
               1-534, gnl|canFam2|chr28 (15457879-15458927)
               

               
               1-534, gnl|dasNov1|scaffold_23763 (47600-48659)
               

               
               1-534, gnl|hg17|chr10 (101278105-101279198)
               

               
               1-534, gnl|Hg17|chr10 (101278774-101278252)
               

               
               1-534, gnl|loxAfr1|scaffold_2838 (21546-20474)
               

               
               1-534, gnl|mm7|chr19 (43501764-43502899)
               

               
               1-534, gnl|Mm7|chr19 (43502466-43501907)
               

               
               1-534, gnl|monDom2|scaffold_14 (22670422-22669387)
               

               
               1-534, gnl|oryCun1|scaffold_194499 (13300-14394)
               

               
               1-534, gnl|panTro1|chr8 (103022933-103024026)
               

               
               1-534, gnl|rheMac2|chr9 (99137797-99138877)
               

               
               1-534, gnl|rn3|chr1 (247343403-247342235)

	1-534, gnl\|bosTau2\|chr26 (11926518-11925995)
	1-534, gnl\|canFam2\|chr28 (15457879-15458927)
	1-534, gnl\|dasNov1\|scaffold_23763 (47600-48659)
	1-534, gnl\|hg17\|chr10 (101278105-101279198)
	1-534, gnl\|Hg17\|chr10 (101278774-101278252)
	1-534, gnl\|loxAfr1\|scaffold_2838 (21546-20474)
	1-534, gnl\|mm7\|chr19 (43501764-43502899)
	1-534, gnl\|Mm7\|chr19 (43502466-43501907)
	1-534, gnl\|monDom2\|scaffold_14 (22670422-22669387)
	1-534, gnl\|oryCun1\|scaffold_194499 (13300-14394)
	1-534, gnl\|panTro1\|chr8 (103022933-103024026)
	1-534, gnl\|rheMac2\|chr9 (99137797-99138877)
	1-534, gnl\|rn3\|chr1 (247343403-247342235)