Non-Coding RNA Search

Pig1-56K20

Sequence:


               
               GGATAGTCTAAGGAAGGACTCTTCGCCTTCTGACTCTAAGCCTTCTTTCCCACAGGGTCA
AGGGAAAGGCCACTGGCCTTGGGCAAAACAACAACCCTCTGTGGATGCTAGGAACAGACT
GCCTTCCTGGGAAGAGTCTAATGATCATCTGTCTCTTGCCATGAACTCTGGGGTGCCTAA
GGGTAAAACTTCTAGGGGAGAACAGCCCAGGTTGGCAGAGCCAGGTATTTACCATGGGAA
ACCGTCTCAAGTGAGAGATGCTAGGCCTAAGGAGCTGGGCAGCAGTGACGACTTGGGGAC
TTCCTTGCCTTTGGATTCCTGGGTGAATGTCACAAGGCTCTGTGATTCTCAGCCTAAACA
TGGGGTCCCTGGGCCAGGAATGAAGTTCTCCTCCCATGATTCTCATACCTGTGTAACCTA
TCCAGAAAGAAACCACATCCTTTTGCATCCCCATTGGAACCAAGACACAGAGCAGGAGAC
CTCAGAATTGGAGTCACTCTACCAGGCCAGTCTTCAGGTTTCTCAATCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATAGTCTAAGGAAGGACTCTTCGCCTTCTGACTCTAAGCCTTCTTTCCCACAGGGTCA
AGGGAAAGGCCACTGGCCTTGGGCAAAACAACAACCCTCTGTGGATGCTAGGAACAGACT
GCCTTCCTGGGAAGAGTCTAATGATCATCTGTCTCTTGCCATGAACTCTGGGGTGCCTAA
GGGTAAAACTTCTAGGGGAGAACAGCCCAGGTTGGCAGAGCCAGGTATTTACCATGGGAA
ACCGTCTCAAGTGAGAGATGCTAGGCCTAAGGAGCTGGGCAGCAGTGACGACTTGGGGAC
TTCCTTGCCTTTGGATTCCTGGGTGAATGTCACAAGGCTCTGTGATTCTCAGCCTAAACA
TGGGGTCCCTGGGCCAGGAATGAAGTTCTCCTCCCATGATTCTCATACCTGTGTAACCTA
TCCAGAAAGAAACCACATCCTTTTGCATCCCCATTGGAACCAAGACACAGAGCAGGAGAC
CTCAGAATTGGAGTCACTCTACCAGGCCAGTCTTCAGGTTTCTCAATCTGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               165-324, + strand, RNAz p=0.936544

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-324, + strand, RNAz p=0.936544

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               294-389, + strand, RNAmicro p=0.999934

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               294-389, + strand, RNAmicro p=0.999934

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               5-532, gnl|bosTau2|chr28 (22744427-22743900)
               

               
               5-532, gnl|Hg17|chr10 (74946718-74946191)
               

               
               5-532, gnl|Mm7|chr14 (18217985-18217455)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-532, gnl|bosTau2|chr28 (22744427-22743900)
               

               
               5-532, gnl|Hg17|chr10 (74946718-74946191)
               

               
               5-532, gnl|Mm7|chr14 (18217985-18217455)

	5-532, gnl\|bosTau2\|chr28 (22744427-22743900)
	5-532, gnl\|Hg17\|chr10 (74946718-74946191)
	5-532, gnl\|Mm7\|chr14 (18217985-18217455)