Non-Coding RNA Search

Pig1-57I13

Sequence:


               
               GATTTATTAAAAAATAGAAAACCTAGGAAACAGATTGACAGTTCATCAATTCTCCCCCGC
CCTCCCCCCGTTTTATTTCCAAGTCATTATCTAGTTTCTGAATGTGGCATTGCAATCTTT
ATTTATTTTACTGCTCTGAACCAAAGCTTTTGAGATAACTCCTTAGCGCTGAGGAAATCC
TGAATCCTCGTGCTGGGAAGGAGAAGCGGGTGTTAAAAGAAATATGGTGACAGGCTCTGA
AATCGTGTTGTCATAACTTATCAGTGGCTGGTAAATAGGGTAGTTGCCTTCTGACACCAT
TTTGAGTGAAGGCGGCTTAATTGCATTTCCCTCTGTTGAGATAAGCATTTAGAATCTGCA
GTCAAATGTATGGATGCTGTGCTCAGAGTATTTCTATTATATAAGATTTGATTTCTTAAG
TGATTTTTCTTTCTAAGTTCCACTTTACATCAGAAGTTACTTGGACAGTGTCTTTTCACT
GGATGTGTATGTGGAGAAACATCACTTAAAAATGTATGTAAATGCAGTGACTGTAAAAAA
ATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTATTAAAAAATAGAAAACCTAGGAAACAGATTGACAGTTCATCAATTCTCCCCCGC
CCTCCCCCCGTTTTATTTCCAAGTCATTATCTAGTTTCTGAATGTGGCATTGCAATCTTT
ATTTATTTTACTGCTCTGAACCAAAGCTTTTGAGATAACTCCTTAGCGCTGAGGAAATCC
TGAATCCTCGTGCTGGGAAGGAGAAGCGGGTGTTAAAAGAAATATGGTGACAGGCTCTGA
AATCGTGTTGTCATAACTTATCAGTGGCTGGTAAATAGGGTAGTTGCCTTCTGACACCAT
TTTGAGTGAAGGCGGCTTAATTGCATTTCCCTCTGTTGAGATAAGCATTTAGAATCTGCA
GTCAAATGTATGGATGCTGTGCTCAGAGTATTTCTATTATATAAGATTTGATTTCTTAAG
TGATTTTTCTTTCTAAGTTCCACTTTACATCAGAAGTTACTTGGACAGTGTCTTTTCACT
GGATGTGTATGTGGAGAAACATCACTTAAAAATGTATGTAAATGCAGTGACTGTAAAAAA
ATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               196-315, - strand, RNAz p=0.950223
               

               
               396-514, + strand, RNAz p=0.557223

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-315, - strand, RNAz p=0.950223
               

               
               396-514, + strand, RNAz p=0.557223

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-532, gnl|bosTau2|chr6 (23633865-23634383)
               

               
               2-532, gnl|Hg17|chr4 (24195957-24195450)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-532, gnl|bosTau2|chr6 (23633865-23634383)
               

               
               2-532, gnl|Hg17|chr4 (24195957-24195450)

	196-315, - strand, RNAz p=0.950223
	396-514, + strand, RNAz p=0.557223

	2-532, gnl\|bosTau2\|chr6 (23633865-23634383)
	2-532, gnl\|Hg17\|chr4 (24195957-24195450)