Non-Coding RNA Search

Pig1-58L18

Sequence:


               
               GCAGGAATTAGACATAAAGCACACAACATGAGCTGTCTCTTCTTTGTAACATCTTTGAAT
AGATGGCCCTGATTTGCACCACTGTTTTCAATCACTTAAAAGGCAATAATTTAATTATGC
CATCCTTTATATAAGAACTGCCATTGCTTTCAGTTCACTTCCAGGCCTGACACAAGTAAA
TCACTTCAATAAAAATCCCTTTTTTCTTCCTCTTAGAGATAAGAGTAAGTAATGATACCA
GTGATCTTCTAAGGACAAAATGAATATAAGGTACTTCATATAGAAAAGCAACATATCTCA
CAAGTCAGTGGTTCGCTGTGTTAAGTTTTTCTTGCATGTATGTGAACAAAATGTTTAAAT
GATTTTACAGAACGACATTTTTAGAGAGGCAGGTGCTTCACTCTCCTTTTGAACTTAAAT
GCTTGGATTGAGCAGTTTGTGTCCCTAGGATGGGCAGAAGAATACACTTTAGAAATATAC
AGTCCATAATTTCAGACCCCTGGTGGTCATTCTTTTATGACTTTAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGAATTAGACATAAAGCACACAACATGAGCTGTCTCTTCTTTGTAACATCTTTGAAT
AGATGGCCCTGATTTGCACCACTGTTTTCAATCACTTAAAAGGCAATAATTTAATTATGC
CATCCTTTATATAAGAACTGCCATTGCTTTCAGTTCACTTCCAGGCCTGACACAAGTAAA
TCACTTCAATAAAAATCCCTTTTTTCTTCCTCTTAGAGATAAGAGTAAGTAATGATACCA
GTGATCTTCTAAGGACAAAATGAATATAAGGTACTTCATATAGAAAAGCAACATATCTCA
CAAGTCAGTGGTTCGCTGTGTTAAGTTTTTCTTGCATGTATGTGAACAAAATGTTTAAAT
GATTTTACAGAACGACATTTTTAGAGAGGCAGGTGCTTCACTCTCCTTTTGAACTTAAAT
GCTTGGATTGAGCAGTTTGTGTCCCTAGGATGGGCAGAAGAATACACTTTAGAAATATAC
AGTCCATAATTTCAGACCCCTGGTGGTCATTCTTTTATGACTTTAACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-201, - strand, RNAz p=0.898723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-201, - strand, RNAz p=0.898723

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               87-217, - strand, RNAmicro p=0.999385

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               87-217, - strand, RNAmicro p=0.999385

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-525, gnl|bosTau2|chr4 (33210131-33209608)
               

               
               2-525, gnl|Hg17|chr7 (35028243-35027727)
               

               
               2-525, gnl|Mm7|chr9 (24621525-24621016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-525, gnl|bosTau2|chr4 (33210131-33209608)
               

               
               2-525, gnl|Hg17|chr7 (35028243-35027727)
               

               
               2-525, gnl|Mm7|chr9 (24621525-24621016)

	2-525, gnl\|bosTau2\|chr4 (33210131-33209608)
	2-525, gnl\|Hg17\|chr7 (35028243-35027727)
	2-525, gnl\|Mm7\|chr9 (24621525-24621016)