Non-Coding RNA Search

Pig1-60H23

Sequence:


               
               GCGGGAAATGCATAAATGGGGATTGATTAAACGATGCAGTTATATAGACATTTCAAGGTG
GCTACAATCACCGGACCCTAGTAACAGAAATCATATGTTTGATGTCTTAGGTGAGAATGA
ATAGTTATGAAGTAATTTTCTCTTATAATTTAATTACATAATTCGGTCTACGGGGAACTG
TTTGTTAACAAAGTGTGGCAATTTATGTACTAAAGGTAAAAACTTATAAGAAACTGCCTA
CATACTTTACTTAAAGGGTAATTACCCTCATATACTCTGTAGCTCACCAGCTTTGATGAA
GGCGGTAGTGAGTTATTATGGTCTTTACTTTGGCAGAAAGACTTTAATAACTTCATCATG
CCACTGATGTCTTAAAATTATGGATTGTATGCAGGTATAATAACTCTCTTTTCGATAGGA
ACTACATTTCTCTTTTCAAGTGGTCGGTAATTTACAGTTAGGGCTTCAGAGATGCTGACT
NTGCATCTCTAGATTATNTCTCTGCTCACAACAACAATGAAATGCCCTATTCATATTTAT
ATAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGAAATGCATAAATGGGGATTGATTAAACGATGCAGTTATATAGACATTTCAAGGTG
GCTACAATCACCGGACCCTAGTAACAGAAATCATATGTTTGATGTCTTAGGTGAGAATGA
ATAGTTATGAAGTAATTTTCTCTTATAATTTAATTACATAATTCGGTCTACGGGGAACTG
TTTGTTAACAAAGTGTGGCAATTTATGTACTAAAGGTAAAAACTTATAAGAAACTGCCTA
CATACTTTACTTAAAGGGTAATTACCCTCATATACTCTGTAGCTCACCAGCTTTGATGAA
GGCGGTAGTGAGTTATTATGGTCTTTACTTTGGCAGAAAGACTTTAATAACTTCATCATG
CCACTGATGTCTTAAAATTATGGATTGTATGCAGGTATAATAACTCTCTTTTCGATAGGA
ACTACATTTCTCTTTTCAAGTGGTCGGTAATTTACAGTTAGGGCTTCAGAGATGCTGACT
NTGCATCTCTAGATTATNTCTCTGCTCACAACAACAATGAAATGCCCTATTCATATTTAT
ATAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-409, - strand, RNAz p=0.994181

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-409, - strand, RNAz p=0.994181

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               279-401, + strand, RNAmicro p=0.999996

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               279-401, + strand, RNAmicro p=0.999996

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               66-546, gnl|bosTau2|chr7 (63660512-63660022)
               

               
               66-546, gnl|Hg17|chr5 (102151697-102152179)
               

               
               66-546, gnl|Mm7|chr1 (97919676-97919197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-546, gnl|bosTau2|chr7 (63660512-63660022)
               

               
               66-546, gnl|Hg17|chr5 (102151697-102152179)
               

               
               66-546, gnl|Mm7|chr1 (97919676-97919197)

	66-546, gnl\|bosTau2\|chr7 (63660512-63660022)
	66-546, gnl\|Hg17\|chr5 (102151697-102152179)
	66-546, gnl\|Mm7\|chr1 (97919676-97919197)