Non-Coding RNA Search

Pig1-60L19

Sequence:


               
               GGGTTTCCTTTCTTGGGGCTTAGCGCTCTCCCCCAGCTCTTCTCTTTGCTCCCCCTTGCT
GGCTGGCACAAGCAGCCCTGTCTTGCGCTTTCTCTTTCTTCCCTTCTCCCTACTCCCTCC
TGCTCCTTCCAGCCCAGCTTTGGGGACACAACACCCCTGGGGAGAAGCAGGGGGAAGAAC
GTTTTTGATGGTCCCCCCCCTTTCTTCTGCTGGCCCTCTCCCCTTCTCCTCCAAAGAAAC
ACCTCAAATTCTTGATGGAATGTATCCCCGTTCTCAGTGAAAATTTGAGGAGGGGACTAA
TACTGGGGTACCTAAAGGGTCAAACCACCTTGATCATCTTCGGGCATTACATTTAGGGAG
CAGTTCTTGGGCTGGATTTTCTGGTGGTGGGAGGGGGAGAGCCAGGGTAAGGGGTCTGCT
GTTTCAAAGAGCAGGAAAGGGCCTGAGGCANTANGAGAGGCCGCTGGAGGGAGGGGCTGC
TCCTCCTCCCCTTCAGTGCCCCCCCCCCGGGGGGGGCCCTCTCTGGACCTTATTAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTCCTTTCTTGGGGCTTAGCGCTCTCCCCCAGCTCTTCTCTTTGCTCCCCCTTGCT
GGCTGGCACAAGCAGCCCTGTCTTGCGCTTTCTCTTTCTTCCCTTCTCCCTACTCCCTCC
TGCTCCTTCCAGCCCAGCTTTGGGGACACAACACCCCTGGGGAGAAGCAGGGGGAAGAAC
GTTTTTGATGGTCCCCCCCCTTTCTTCTGCTGGCCCTCTCCCCTTCTCCTCCAAAGAAAC
ACCTCAAATTCTTGATGGAATGTATCCCCGTTCTCAGTGAAAATTTGAGGAGGGGACTAA
TACTGGGGTACCTAAAGGGTCAAACCACCTTGATCATCTTCGGGCATTACATTTAGGGAG
CAGTTCTTGGGCTGGATTTTCTGGTGGTGGGAGGGGGAGAGCCAGGGTAAGGGGTCTGCT
GTTTCAAAGAGCAGGAAAGGGCCTGAGGCANTANGAGAGGCCGCTGGAGGGAGGGGCTGC
TCCTCCTCCCCTTCAGTGCCCCCCCCCCGGGGGGGGCCCTCTCTGGACCTTATTAGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               54-320, - strand, RNAz p=0.996769
               

               
               398-517, - strand, RNAz p=0.999991

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-320, - strand, RNAz p=0.996769
               

               
               398-517, - strand, RNAz p=0.999991

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               119-252, + strand, RNAmicro p=0.999499
               

               
               464-544, - strand, RNAmicro p=0.981105

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               119-252, + strand, RNAmicro p=0.999499
               

               
               464-544, - strand, RNAmicro p=0.981105

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               212-310, BX433246 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX433246.2|), blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 601590901F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE (gb|BE796088.1|), 
blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 602456252F1 NIH_MGC_16 Homo sapiens cDNA clone IMAGE (gb|BG396887.1|), 
blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 603388191F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BI859452.1|), 
blast E-value=6e-33, identity=93.94% 
               

               
               212-310, AGENCOURT_6395032 NIH_MGC_67 Homo sapiens cDNA clone IMAGE 
(gb|BM451586.1|), blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 17000532546176 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN402222.1|), blast E-value=6e-33, identity=93.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               212-310, BX433246 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX433246.2|), blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 601590901F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE (gb|BE796088.1|), 
blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 602456252F1 NIH_MGC_16 Homo sapiens cDNA clone IMAGE (gb|BG396887.1|), 
blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 603388191F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BI859452.1|), 
blast E-value=6e-33, identity=93.94% 
               

               
               212-310, AGENCOURT_6395032 NIH_MGC_67 Homo sapiens cDNA clone IMAGE 
(gb|BM451586.1|), blast E-value=6e-33, identity=93.94% 
               

               
               212-310, 17000532546176 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN402222.1|), blast E-value=6e-33, identity=93.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-530, gnl|bosTau2|chr3 (10544264-10544771)
               

               
               19-530, gnl|Hg17|chr1 (152858676-152858160)
               

               
               19-530, gnl|Mm7|chr3 (88651683-88652141)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-530, gnl|bosTau2|chr3 (10544264-10544771)
               

               
               19-530, gnl|Hg17|chr1 (152858676-152858160)
               

               
               19-530, gnl|Mm7|chr3 (88651683-88652141)

	54-320, - strand, RNAz p=0.996769
	398-517, - strand, RNAz p=0.999991

	119-252, + strand, RNAmicro p=0.999499
	464-544, - strand, RNAmicro p=0.981105

	212-310, BX433246 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX433246.2\|), blast E-value=6e-33, identity=93.94%
	212-310, 601590901F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE (gb\|BE796088.1\|), blast E-value=6e-33, identity=93.94%
	212-310, 602456252F1 NIH_MGC_16 Homo sapiens cDNA clone IMAGE (gb\|BG396887.1\|), blast E-value=6e-33, identity=93.94%
	212-310, 603388191F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb\|BI859452.1\|), blast E-value=6e-33, identity=93.94%
	212-310, AGENCOURT_6395032 NIH_MGC_67 Homo sapiens cDNA clone IMAGE (gb\|BM451586.1\|), blast E-value=6e-33, identity=93.94%
	212-310, 17000532546176 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN402222.1\|), blast E-value=6e-33, identity=93.94%

	19-530, gnl\|bosTau2\|chr3 (10544264-10544771)
	19-530, gnl\|Hg17\|chr1 (152858676-152858160)
	19-530, gnl\|Mm7\|chr3 (88651683-88652141)