Non-Coding RNA Search

Pig1-60N18

Sequence:


               
               CCCCTTCCTAGCCCCGGCCACTGTGACCCCCCCCTCCCGGCGGGTCTGTGATCTATGAGG
CCAGCTCACTGCCCCCGGGGGCTCCTGCATCTGCCCGGCCCCATTCCCAGATTGTTACCG
GGGGGGTCCCCTTCCCCCCACCCCACCCGGAGACAGAGCACAATTATTTTTATAAGCAGA
GAATTTTTTTTATGTCTTACCAGATAGAGTTAGAGATGCAGGGAGGGAGGGGGCCTGCTG
GGGAGTGGGGTGTTGGGGGCCCTCTGCCAAGATCCAGCCTCATGTGGTGGAAGGCACTTC
CCCCCCAGGGGCCGCCCCAGCAGGGAAGGGCTCCTCCTCCATTTCTAAGCACTGAGTTGC
CACAGGGAGAAACTGGGACCTCTCTCTCCTGCCCTCCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTTCCTAGCCCCGGCCACTGTGACCCCCCCCTCCCGGCGGGTCTGTGATCTATGAGG
CCAGCTCACTGCCCCCGGGGGCTCCTGCATCTGCCCGGCCCCATTCCCAGATTGTTACCG
GGGGGGTCCCCTTCCCCCCACCCCACCCGGAGACAGAGCACAATTATTTTTATAAGCAGA
GAATTTTTTTTATGTCTTACCAGATAGAGTTAGAGATGCAGGGAGGGAGGGGGCCTGCTG
GGGAGTGGGGTGTTGGGGGCCCTCTGCCAAGATCCAGCCTCATGTGGTGGAAGGCACTTC
CCCCCCAGGGGCCGCCCCAGCAGGGAAGGGCTCCTCCTCCATTTCTAAGCACTGAGTTGC
CACAGGGAGAAACTGGGACCTCTCTCTCCTGCCCTCCCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               167-388, + strand, RNAz p=0.973992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-388, + strand, RNAz p=0.973992

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               341-447, + strand, RNAmicro p=0.994299

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               341-447, + strand, RNAmicro p=0.994299

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC047896, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC047896, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-401, gnl|bosTau2|chr29 (33518283-33518678)
               

               
               1-401, gnl|Hg17|chr11 (63895518-63895905)
               

               
               1-401, gnl|Mm7|chr19 (6649813-6649295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr29 (33518283-33518678)
               

               
               1-401, gnl|Hg17|chr11 (63895518-63895905)
               

               
               1-401, gnl|Mm7|chr19 (6649813-6649295)

	1-401, gnl\|bosTau2\|chr29 (33518283-33518678)
	1-401, gnl\|Hg17\|chr11 (63895518-63895905)
	1-401, gnl\|Mm7\|chr19 (6649813-6649295)