Non-Coding RNA Search

Pig1-61B01

Sequence:


               
               GCTGCAAAGCCGCAGGCCACAGTGCCTCCACTTTGGGAGGAGGAGCAAAAGAGCTCGCGA
CCTTTACAAGCCTTCCCCACCGCCACCACCACTTGGGATAAGGGACCGTGAGAGAAGCGA
GGGACCTCTGCACTGATTTTGCAATTAACGAAGGCCCCGTTAGGGGCCTTTTTTGAAATC
CACGTTTGGCATTATGCCCTTGTAGGAATGTACGCGCCAAGAGAACTTCAAAAACTATTT
ATACTCGCAACTTAATTGCAAAAACACGTAAGTGACAAAAGCAATCTTTGCATTTTTTTT
TTTTTTTTTTGGGCCATTTTATTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCAAAGCCGCAGGCCACAGTGCCTCCACTTTGGGAGGAGGAGCAAAAGAGCTCGCGA
CCTTTACAAGCCTTCCCCACCGCCACCACCACTTGGGATAAGGGACCGTGAGAGAAGCGA
GGGACCTCTGCACTGATTTTGCAATTAACGAAGGCCCCGTTAGGGGCCTTTTTTGAAATC
CACGTTTGGCATTATGCCCTTGTAGGAATGTACGCGCCAAGAGAACTTCAAAAACTATTT
ATACTCGCAACTTAATTGCAAAAACACGTAAGTGACAAAAGCAATCTTTGCATTTTTTTT
TTTTTTTTTTGGGCCATTTTATTTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-91, - strand, RNAz p=0.979053
               

               
               134-247, - strand, RNAz p=0.996717

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-91, - strand, RNAz p=0.979053
               

               
               134-247, - strand, RNAz p=0.996717

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               2-292, gnl|bosTau2|chr25 (23502953-23503244)
               

               
               2-292, gnl|canFam2|chr6 (3514319-3514568)
               

               
               2-292, gnl|canFam2|chr6 (3514310-3514501)
               

               
               2-292, gnl|dasNov1|scaffold_150692 (3225-3037)
               

               
               2-292, gnl|dasNov1|scaffold_150692 (3232-3043)
               

               
               2-292, gnl|hg17|chr7 (64640964-64641235)
               

               
               2-292, gnl|hg17|chr7 (55876135-55876362)
               

               
               2-292, gnl|loxAfr1|scaffold_36239 (13389-13153)
               

               
               2-292, gnl|loxAfr1|scaffold_36239 (13390-13169)
               

               
               2-292, gnl|mm7|chr5 (129017143-129017361)
               

               
               2-292, gnl|mm7|chr5 (129017143-129017356)
               

               
               2-292, gnl|panTro1|chr6 (57572436-57572614)
               

               
               2-292, gnl|panTro1|chr6 (57572429-57572659)
               

               
               2-292, gnl|rheMac2|chr3 (59295296-59295028)
               

               
               2-292, gnl|rheMac2|chr3 (59295296-59295048)
               

               
               2-292, gnl|rn3|chr12 (27847781-27847999)
               

               
               2-292, gnl|rn3|chr12 (27847781-27847994)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-292, gnl|bosTau2|chr25 (23502953-23503244)
               

               
               2-292, gnl|canFam2|chr6 (3514319-3514568)
               

               
               2-292, gnl|canFam2|chr6 (3514310-3514501)
               

               
               2-292, gnl|dasNov1|scaffold_150692 (3225-3037)
               

               
               2-292, gnl|dasNov1|scaffold_150692 (3232-3043)
               

               
               2-292, gnl|hg17|chr7 (64640964-64641235)
               

               
               2-292, gnl|hg17|chr7 (55876135-55876362)
               

               
               2-292, gnl|loxAfr1|scaffold_36239 (13389-13153)
               

               
               2-292, gnl|loxAfr1|scaffold_36239 (13390-13169)
               

               
               2-292, gnl|mm7|chr5 (129017143-129017361)
               

               
               2-292, gnl|mm7|chr5 (129017143-129017356)
               

               
               2-292, gnl|panTro1|chr6 (57572436-57572614)
               

               
               2-292, gnl|panTro1|chr6 (57572429-57572659)
               

               
               2-292, gnl|rheMac2|chr3 (59295296-59295028)
               

               
               2-292, gnl|rheMac2|chr3 (59295296-59295048)
               

               
               2-292, gnl|rn3|chr12 (27847781-27847999)
               

               
               2-292, gnl|rn3|chr12 (27847781-27847994)

	2-91, - strand, RNAz p=0.979053
	134-247, - strand, RNAz p=0.996717

	2-292, gnl\|bosTau2\|chr25 (23502953-23503244)
	2-292, gnl\|canFam2\|chr6 (3514319-3514568)
	2-292, gnl\|canFam2\|chr6 (3514310-3514501)
	2-292, gnl\|dasNov1\|scaffold_150692 (3225-3037)
	2-292, gnl\|dasNov1\|scaffold_150692 (3232-3043)
	2-292, gnl\|hg17\|chr7 (64640964-64641235)
	2-292, gnl\|hg17\|chr7 (55876135-55876362)
	2-292, gnl\|loxAfr1\|scaffold_36239 (13389-13153)
	2-292, gnl\|loxAfr1\|scaffold_36239 (13390-13169)
	2-292, gnl\|mm7\|chr5 (129017143-129017361)
	2-292, gnl\|mm7\|chr5 (129017143-129017356)
	2-292, gnl\|panTro1\|chr6 (57572436-57572614)
	2-292, gnl\|panTro1\|chr6 (57572429-57572659)
	2-292, gnl\|rheMac2\|chr3 (59295296-59295028)
	2-292, gnl\|rheMac2\|chr3 (59295296-59295048)
	2-292, gnl\|rn3\|chr12 (27847781-27847999)
	2-292, gnl\|rn3\|chr12 (27847781-27847994)