Non-Coding RNA Search

Pig1-61B18

Sequence:


               
               CTGGGGCTGGGAAAGAACTAAGCACCTCAGCATCTGAGAAATCTAGCTTGCCCAAGCTCT
GACTCATCTCCCTTCAACCTGCCTCTCCTTCCCTCCTCCAGACACGAAGGGCCTGTATTT
CCAGGCATTCGGAGGCCGCCGCCGCTGTCTCAGCAAGAGTGTAGCCCCCTTGCTGGCCCA
TGGCTACCGCCGCTTCTTGCCCACCAAGGACCACATCTTCATTCTTGACTACGCGGAGAC
CCTCTTCTTCCTCAAAAATGCCCTGGTCTCCTCCACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGCTGGGAAAGAACTAAGCACCTCAGCATCTGAGAAATCTAGCTTGCCCAAGCTCT
GACTCATCTCCCTTCAACCTGCCTCTCCTTCCCTCCTCCAGACACGAAGGGCCTGTATTT
CCAGGCATTCGGAGGCCGCCGCCGCTGTCTCAGCAAGAGTGTAGCCCCCTTGCTGGCCCA
TGGCTACCGCCGCTTCTTGCCCACCAAGGACCACATCTTCATTCTTGACTACGCGGAGAC
CCTCTTCTTCCTCAAAAATGCCCTGGTCTCCTCCACCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               70-279, - strand, RNAz p=0.747166

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-279, - strand, RNAz p=0.747166

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               70-279, gnl|bosTau2|chr25 (32376832-32376623)
               

               
               70-279, gnl|canFam2|chr6 (12104596-12104236)
               

               
               70-279, gnl|echTel1|scaffold_293363 (43908-44284)
               

               
               70-279, gnl|hg17|chr7 (99833830-99834182)
               

               
               70-279, gnl|Hg17|chr7 (99833909-99834115)
               

               
               70-279, gnl|mm7|chr5 (136540137-136539772)
               

               
               70-279, gnl|Mm7|chr5 (136540043-136539837)
               

               
               70-279, gnl|monDom2|scaffold_66 (2445117-2445466)
               

               
               70-279, gnl|panTro1|chr6 (101608874-101609226)
               

               
               70-279, gnl|rn3|chr12 (19677426-19677056)
               

               
               70-279, gnl|xenTro1|scaffold_1396 (1954-2300)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-279, gnl|bosTau2|chr25 (32376832-32376623)
               

               
               70-279, gnl|canFam2|chr6 (12104596-12104236)
               

               
               70-279, gnl|echTel1|scaffold_293363 (43908-44284)
               

               
               70-279, gnl|hg17|chr7 (99833830-99834182)
               

               
               70-279, gnl|Hg17|chr7 (99833909-99834115)
               

               
               70-279, gnl|mm7|chr5 (136540137-136539772)
               

               
               70-279, gnl|Mm7|chr5 (136540043-136539837)
               

               
               70-279, gnl|monDom2|scaffold_66 (2445117-2445466)
               

               
               70-279, gnl|panTro1|chr6 (101608874-101609226)
               

               
               70-279, gnl|rn3|chr12 (19677426-19677056)
               

               
               70-279, gnl|xenTro1|scaffold_1396 (1954-2300)

	70-279, gnl\|bosTau2\|chr25 (32376832-32376623)
	70-279, gnl\|canFam2\|chr6 (12104596-12104236)
	70-279, gnl\|echTel1\|scaffold_293363 (43908-44284)
	70-279, gnl\|hg17\|chr7 (99833830-99834182)
	70-279, gnl\|Hg17\|chr7 (99833909-99834115)
	70-279, gnl\|mm7\|chr5 (136540137-136539772)
	70-279, gnl\|Mm7\|chr5 (136540043-136539837)
	70-279, gnl\|monDom2\|scaffold_66 (2445117-2445466)
	70-279, gnl\|panTro1\|chr6 (101608874-101609226)
	70-279, gnl\|rn3\|chr12 (19677426-19677056)
	70-279, gnl\|xenTro1\|scaffold_1396 (1954-2300)