Non-Coding RNA Search

Pig1-61F06

Sequence:


               
               GCCCGTTTTCCCAAGCCCCATCTTCCCCATCACTTCTCCCCCATGTCATGCCAGCCCCTC
CTCATTCTCCCGAATTACTTCCCAGGTCTCCCCAAATCTCTCTCCACACACCCCCAGCTC
TCCACTTGCATTCTCTGCCAGTGCACCCCAGTTTCCAGTCCCGTCTTCTCAGTTTCCACA
GAGTTCTCTCCTCCCCAGTTGTTCCCAGGTCACTCTTGCTCCTTCTTCCTTTCCTCCCTG
CCCCTCAGCTTCTCCCCTCCCCTCCACCACAGCAGCCCCTCTCCTCTCTCTGGCTAGTGC
CTTCTCACTGGCTGTGATGACTGTGGCCCAGTCCCTGTTGTCCCCCTCACCTGGGCTCCT
CTCCCAGTCTCCTCCAGCCCCTTCTAGTCCCCTGCCTAGCCTGCCCGCTCCAACTCCCCT
TGCTCCTTGTGGCCAGGAGAGGCCTTCAGCTCTGACAGCTGAGATGGAGAATGAGGCCTC
TCCAAATCCTGGTCGGCCACTCCTGGGTGAAGCCAGACTGGCGCCTATCTCTGAAGAGGG
AAAGCCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGTTTTCCCAAGCCCCATCTTCCCCATCACTTCTCCCCCATGTCATGCCAGCCCCTC
CTCATTCTCCCGAATTACTTCCCAGGTCTCCCCAAATCTCTCTCCACACACCCCCAGCTC
TCCACTTGCATTCTCTGCCAGTGCACCCCAGTTTCCAGTCCCGTCTTCTCAGTTTCCACA
GAGTTCTCTCCTCCCCAGTTGTTCCCAGGTCACTCTTGCTCCTTCTTCCTTTCCTCCCTG
CCCCTCAGCTTCTCCCCTCCCCTCCACCACAGCAGCCCCTCTCCTCTCTCTGGCTAGTGC
CTTCTCACTGGCTGTGATGACTGTGGCCCAGTCCCTGTTGTCCCCCTCACCTGGGCTCCT
CTCCCAGTCTCCTCCAGCCCCTTCTAGTCCCCTGCCTAGCCTGCCCGCTCCAACTCCCCT
TGCTCCTTGTGGCCAGGAGAGGCCTTCAGCTCTGACAGCTGAGATGGAGAATGAGGCCTC
TCCAAATCCTGGTCGGCCACTCCTGGGTGAAGCCAGACTGGCGCCTATCTCTGAAGAGGG
AAAGCCCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-456, - strand, RNAz p=0.998862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-456, - strand, RNAz p=0.998862

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               258-406, BX118400 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(emb|BX118400.1|), blast E-value=0, identity=96.64% 
               

               
               257-406, AGENCOURT_17620015 NIH_MGC_236 Rattus norvegicus cDNA clone 
(gb|CK473387.1|), blast E-value=0, identity=92.67% 
               

               
               259-406, AGENCOURT_17890336 NIH_MGC_238 Rattus norvegicus cDNA clone 
(gb|CK603519.1|), blast E-value=0, identity=91.89% 
               

               
               257-456, 4061027 BARC 8BOV Bos taurus cDNA clone 8BOV_11O19 5', mRNA 
(gb|CK835991.1|), blast E-value=0, identity=89.5% 
               

               
               257-456, LB01618.CR_O14 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT812577.1|), 
blast E-value=0, identity=89.5% 
               

               
               257-456, LB0281.CR_D04 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV906927.1|), 
blast E-value=0, identity=89.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               258-406, BX118400 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(emb|BX118400.1|), blast E-value=0, identity=96.64% 
               

               
               257-406, AGENCOURT_17620015 NIH_MGC_236 Rattus norvegicus cDNA clone 
(gb|CK473387.1|), blast E-value=0, identity=92.67% 
               

               
               259-406, AGENCOURT_17890336 NIH_MGC_238 Rattus norvegicus cDNA clone 
(gb|CK603519.1|), blast E-value=0, identity=91.89% 
               

               
               257-456, 4061027 BARC 8BOV Bos taurus cDNA clone 8BOV_11O19 5', mRNA 
(gb|CK835991.1|), blast E-value=0, identity=89.5% 
               

               
               257-456, LB01618.CR_O14 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT812577.1|), 
blast E-value=0, identity=89.5% 
               

               
               257-456, LB0281.CR_D04 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV906927.1|), 
blast E-value=0, identity=89.5%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-476, gnl|bosTau2|chr19 (38944049-38943578)
               

               
               2-476, gnl|Hg17|chr17 (38200429-38200927)
               

               
               2-476, gnl|Mm7|chr11 (101384130-101384589)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-476, gnl|bosTau2|chr19 (38944049-38943578)
               

               
               2-476, gnl|Hg17|chr17 (38200429-38200927)
               

               
               2-476, gnl|Mm7|chr11 (101384130-101384589)

	258-406, BX118400 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (emb\|BX118400.1\|), blast E-value=0, identity=96.64%
	257-406, AGENCOURT_17620015 NIH_MGC_236 Rattus norvegicus cDNA clone (gb\|CK473387.1\|), blast E-value=0, identity=92.67%
	259-406, AGENCOURT_17890336 NIH_MGC_238 Rattus norvegicus cDNA clone (gb\|CK603519.1\|), blast E-value=0, identity=91.89%
	257-456, 4061027 BARC 8BOV Bos taurus cDNA clone 8BOV_11O19 5', mRNA (gb\|CK835991.1\|), blast E-value=0, identity=89.5%
	257-456, LB01618.CR_O14 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT812577.1\|), blast E-value=0, identity=89.5%
	257-456, LB0281.CR_D04 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV906927.1\|), blast E-value=0, identity=89.5%

	2-476, gnl\|bosTau2\|chr19 (38944049-38943578)
	2-476, gnl\|Hg17\|chr17 (38200429-38200927)
	2-476, gnl\|Mm7\|chr11 (101384130-101384589)