Non-Coding RNA Search

Pig1-61G06

Sequence:


               
               GGGGAGCTGATGGAGCCCCAGGGCTGAAGGGATTCCCGGGAGATCCAGGTCGCGAGGGAT
TCCCAGGACCCCCAGGGTTTGTGGGGCCCCGAGGATCCAAAGGTGCAGTGGGCCCCCCCG
GCCTGGACGGACTCCCAGGCCCCTCCGGCCTGCCAGGGCCAGTCGGACCCCCAGGGGACA
AGGGCCTTCCTGGAGAAGTCCTGGGGGCCCAGCCGGGTTCCCGGGGAGACCCCGGACTGC
CTGGACACCCCGGGCTGAAGGGCCCCCCAGGAGAGAGAGGAGCGCCTGGATTCAGAGGAA
GCGAGGGGATGCCAGGAATGCCAGGCCTCAAGGGGCAGCCGGGCTTCCCAGGACCTTCGG
GCCAGCCGGGCCTGCCCGGGCCGCCAGGACAGCACGGCTTCCCAGGAGCTCCGGGCCGGG
AAGGGCCCTTGGGGCCGCCGGGCGCCCCAGGCTTTGGAGGTCTGCCTGGAGACAGAGGGG
ACCCAGGTGACACAGGCGTCCCTGGCCCTGTGGGCATGAAGGGCCTCTCCGGGGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGCTGATGGAGCCCCAGGGCTGAAGGGATTCCCGGGAGATCCAGGTCGCGAGGGAT
TCCCAGGACCCCCAGGGTTTGTGGGGCCCCGAGGATCCAAAGGTGCAGTGGGCCCCCCCG
GCCTGGACGGACTCCCAGGCCCCTCCGGCCTGCCAGGGCCAGTCGGACCCCCAGGGGACA
AGGGCCTTCCTGGAGAAGTCCTGGGGGCCCAGCCGGGTTCCCGGGGAGACCCCGGACTGC
CTGGACACCCCGGGCTGAAGGGCCCCCCAGGAGAGAGAGGAGCGCCTGGATTCAGAGGAA
GCGAGGGGATGCCAGGAATGCCAGGCCTCAAGGGGCAGCCGGGCTTCCCAGGACCTTCGG
GCCAGCCGGGCCTGCCCGGGCCGCCAGGACAGCACGGCTTCCCAGGAGCTCCGGGCCGGG
AAGGGCCCTTGGGGCCGCCGGGCGCCCCAGGCTTTGGAGGTCTGCCTGGAGACAGAGGGG
ACCCAGGTGACACAGGCGTCCCTGGCCCTGTGGGCATGAAGGGCCTCTCCGGGGACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               73-298, + strand, RNAz p=0.936885

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-298, + strand, RNAz p=0.936885

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               83-272, + strand, RNAmicro p=0.99327
               

               
               78-294, - strand, RNAmicro p=0.981326

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               83-272, + strand, RNAmicro p=0.99327
               

               
               78-294, - strand, RNAmicro p=0.981326

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-298, gnl|bosTau2|chr12 (46248431-46248206)
               

               
               73-298, gnl|Hg17|chr13 (109923274-109923499)
               

               
               73-298, gnl|Mm7|chr8 (11397315-11397540)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-298, gnl|bosTau2|chr12 (46248431-46248206)
               

               
               73-298, gnl|Hg17|chr13 (109923274-109923499)
               

               
               73-298, gnl|Mm7|chr8 (11397315-11397540)

	83-272, + strand, RNAmicro p=0.99327
	78-294, - strand, RNAmicro p=0.981326

	73-298, gnl\|bosTau2\|chr12 (46248431-46248206)
	73-298, gnl\|Hg17\|chr13 (109923274-109923499)
	73-298, gnl\|Mm7\|chr8 (11397315-11397540)