Non-Coding RNA Search

Pig1-61G17

Sequence:


               
               GCTCAGACACCAGAAAGACTCCGAACGAGAAGCAACACGCACAGATTCAGAGCAGGATAG
AGCTGGGCAGACCCACCAGTGACCCGGCAACCAGCCCAGCCCCAGCATCAGTATCGCCAG
AGGGGCCAAAAGGGGAGTTAGGAGGTTTGCCAGCCAGTCCAGCCAGTCCTGCGGCATCTG
GCCCTCCACAGAATACTGACTTGGTTCCCCTGGACCTCTCTCTAGGAGGCGCCAACAGCC
CTGGGCCCCGGGAGAGCACGTGTCGGCTCAGTCCAAGGCCTGGGGCCCAGGAGAGCTCTG
TGTCCTGGCCGGATGGTTCTGAGCAGTCTCTAGGGTGGAACCAGTCCCAGGCTGAGCCAG
AAGCCCAGACTTGTTCTGGGCCCCCCAAAGAAGCAGGGCCCCTGGAGCCCAGAGAAGGCA
AGTCTGGCAAAGCCAGGGCCCAGCAGGGCCTGGTACCTCGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGACACCAGAAAGACTCCGAACGAGAAGCAACACGCACAGATTCAGAGCAGGATAG
AGCTGGGCAGACCCACCAGTGACCCGGCAACCAGCCCAGCCCCAGCATCAGTATCGCCAG
AGGGGCCAAAAGGGGAGTTAGGAGGTTTGCCAGCCAGTCCAGCCAGTCCTGCGGCATCTG
GCCCTCCACAGAATACTGACTTGGTTCCCCTGGACCTCTCTCTAGGAGGCGCCAACAGCC
CTGGGCCCCGGGAGAGCACGTGTCGGCTCAGTCCAAGGCCTGGGGCCCAGGAGAGCTCTG
TGTCCTGGCCGGATGGTTCTGAGCAGTCTCTAGGGTGGAACCAGTCCCAGGCTGAGCCAG
AAGCCCAGACTTGTTCTGGGCCCCCCAAAGAAGCAGGGCCCCTGGAGCCCAGAGAAGGCA
AGTCTGGCAAAGCCAGGGCCCAGCAGGGCCTGGTACCTCGAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-464, - strand, RNAz p=0.998991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-464, - strand, RNAz p=0.998991

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               345-475, - strand, RNAmicro p=0.999933
               

               
               228-455, + strand, RNAmicro p=0.997434
               

               
               43-190, - strand, RNAmicro p=0.987154
               

               
               238-341, - strand, RNAmicro p=0.913344

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               345-475, - strand, RNAmicro p=0.999933
               

               
               228-455, + strand, RNAmicro p=0.997434
               

               
               43-190, - strand, RNAmicro p=0.987154
               

               
               238-341, - strand, RNAmicro p=0.913344

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               119-452, LB02611.CR_I11 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879922.1|), 
blast E-value=0, identity=82.34%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               119-452, LB02611.CR_I11 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV879922.1|), 
blast E-value=0, identity=82.34%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-464, gnl|bosTau2|chr10 (23722613-23722151)
               

               
               8-464, gnl|Hg17|chr15 (38415182-38414741)
               

               
               8-464, gnl|Mm7|chr2 (118498594-118498150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-464, gnl|bosTau2|chr10 (23722613-23722151)
               

               
               8-464, gnl|Hg17|chr15 (38415182-38414741)
               

               
               8-464, gnl|Mm7|chr2 (118498594-118498150)

	345-475, - strand, RNAmicro p=0.999933
	228-455, + strand, RNAmicro p=0.997434
	43-190, - strand, RNAmicro p=0.987154
	238-341, - strand, RNAmicro p=0.913344

	8-464, gnl\|bosTau2\|chr10 (23722613-23722151)
	8-464, gnl\|Hg17\|chr15 (38415182-38414741)
	8-464, gnl\|Mm7\|chr2 (118498594-118498150)