Pig1-61H03
|
GCCGGGAGTCGGGCCGCAGTCATGCTGAGCCGGCTCGGGGCGCTGCTACAGGAGGCCGTG
GGGGCGCGGGAGCCAAGCATAGACCTGCTGGAGGCCTTCGTGGAGCACTGGAAGGGCATC
ACAAACTACTACATCGAAAGCACAGATGAAAACACCCCAGCGAAGAAGACAGATATTCCC
TGGCGGCTGAAGCAGATGCTGGACATCCTAGTCTATGAGGAGCGGCAGCAGGCAGCCGGC
GAGGCGGGGCCATGTCTGGAGTACCTGCTGCAGCACAAGATCCTGGAGACCCTGTGCACG
TTGGGCAAGGCCGAGTACCCACCAGGCATGCGGCAGCAGGTGCTCCAATTTTTCAGCAAG
GTTCTGGCCCAGGTGCAGCATCCCCTCCTGCATTACCTCAACGTCCACAGACCTGTGCAG
AAACTTCTCCGACTTGGTGGGACAGTTCCTGGATCCCTCACAGAAAAGGAGGAGGTGCAG
TTCACCACTGTCCTCTGCTCCAAGATCCAGCAGGATCCAGCCCTGCTCACCTACATCCTG
GAAGGTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCGGGAGTCGGGCCGCAGTCATGCTGAGCCGGCTCGGGGCGCTGCTACAGGAGGCCGTG
GGGGCGCGGGAGCCAAGCATAGACCTGCTGGAGGCCTTCGTGGAGCACTGGAAGGGCATC
ACAAACTACTACATCGAAAGCACAGATGAAAACACCCCAGCGAAGAAGACAGATATTCCC
TGGCGGCTGAAGCAGATGCTGGACATCCTAGTCTATGAGGAGCGGCAGCAGGCAGCCGGC
GAGGCGGGGCCATGTCTGGAGTACCTGCTGCAGCACAAGATCCTGGAGACCCTGTGCACG
TTGGGCAAGGCCGAGTACCCACCAGGCATGCGGCAGCAGGTGCTCCAATTTTTCAGCAAG
GTTCTGGCCCAGGTGCAGCATCCCCTCCTGCATTACCTCAACGTCCACAGACCTGTGCAG
AAACTTCTCCGACTTGGTGGGACAGTTCCTGGATCCCTCACAGAAAAGGAGGAGGTGCAG
TTCACCACTGTCCTCTGCTCCAAGATCCAGCAGGATCCAGCCCTGCTCACCTACATCCTG
GAAGGTAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
144-315, gnl|bosTau2|chr8 (31494057-31493883) |
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144-315, gnl|Hg17|chr8 (22009792-22009966) |
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144-315, gnl|Mm7|chr14 (65236233-65236059) |
| |
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419-544, gnl|bosTau2|chr8 (31492850-31492725) |
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419-544, gnl|canFam2|chr25 (38140464-38140325) |
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419-544, gnl|danRer3|chr8 (39705361-39705231) |
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419-544, gnl|echTel1|scaffold_313141 (181228-181089) |
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419-544, gnl|fr1|chrUn (263290618-263290482) |
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419-544, gnl|hg17|chr8 (22011166-22011305) |
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419-544, gnl|Hg17|chr8 (22011172-22011297) |
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419-544, gnl|loxAfr1|scaffold_115821 (3883-4022) |
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419-544, gnl|mm7|chr14 (65234744-65234606) |
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419-544, gnl|Mm7|chr14 (65234737-65234612) |
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419-544, gnl|monDom2|scaffold_1 (73551737-73551598) |
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419-544, gnl|oryCun1|scaffold_154665 (685-549) |
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419-544, gnl|panTro1|chr7 (22943665-22943804) |
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419-544, gnl|rheMac2|chr8 (22020485-22020624) |
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419-544, gnl|rn3|chr15 (51006076-51005937) |
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419-544, gnl|tetNig1|chr17 (1483083-1483218) |
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419-544, gnl|xenTro1|scaffold_106 (1373110-1372964) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
144-315, gnl|bosTau2|chr8 (31494057-31493883) |
|
144-315, gnl|Hg17|chr8 (22009792-22009966) |
|
144-315, gnl|Mm7|chr14 (65236233-65236059) |
| |
|
419-544, gnl|bosTau2|chr8 (31492850-31492725) |
|
419-544, gnl|canFam2|chr25 (38140464-38140325) |
|
419-544, gnl|danRer3|chr8 (39705361-39705231) |
|
419-544, gnl|echTel1|scaffold_313141 (181228-181089) |
|
419-544, gnl|fr1|chrUn (263290618-263290482) |
|
419-544, gnl|hg17|chr8 (22011166-22011305) |
|
419-544, gnl|Hg17|chr8 (22011172-22011297) |
|
419-544, gnl|loxAfr1|scaffold_115821 (3883-4022) |
|
419-544, gnl|mm7|chr14 (65234744-65234606) |
|
419-544, gnl|Mm7|chr14 (65234737-65234612) |
|
419-544, gnl|monDom2|scaffold_1 (73551737-73551598) |
|
419-544, gnl|oryCun1|scaffold_154665 (685-549) |
|
419-544, gnl|panTro1|chr7 (22943665-22943804) |
|
419-544, gnl|rheMac2|chr8 (22020485-22020624) |
|
419-544, gnl|rn3|chr15 (51006076-51005937) |
|
419-544, gnl|tetNig1|chr17 (1483083-1483218) |
|
419-544, gnl|xenTro1|scaffold_106 (1373110-1372964) |
