Non-Coding RNA Search

Pig1-61I06

Sequence:


               
               GATGATGCGGCAAATGCCAGTCCTCAGAAGCCTGCGCTGCCGAGAGGAGCAGGCTGGCAA
GGACGTCACCCTCCGGGACGGGCATCGGCCTCTTCCACGGGTCCAGGCTGCCCTGAGCCC
TGGCAGAAGCCCATGTGACCCACCCCGGCCGGAACTGGGCTCTGTGCCTTCCGACACTGT
CTATGTTGGGAACCTTCCCCGGGACGCCCGGGTGAGTGAGCTGAAGCGGGCCCTTGGCGC
TCTCGGCGTGGCCCCGCTGCGGCTCACCTGGCAGGGCGCGCAGCACAGGGCCTTCCTCCG
CTACCAGGACCCGGCCGCGGCCCAGCACGCTGTCTCCTGCTTGCAGGGTTTTCGCCTGGG
CGCCAACACTGTGAGGGTGTCTCTGGCCAGGCAGCAGACGGCCGGTGACCCAGCAGGTGG
CCGCACTGGAGGGCCACACCCTGACCGATGCTCGGCCGGGGCTGCCCCGTGATGATACCC
CCGTCTGGTCCCCACCGAACCTCAGAGCCCGGCGCAGAGGGACGTGGTGGGGGCTGTTCC
TGCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGATGCGGCAAATGCCAGTCCTCAGAAGCCTGCGCTGCCGAGAGGAGCAGGCTGGCAA
GGACGTCACCCTCCGGGACGGGCATCGGCCTCTTCCACGGGTCCAGGCTGCCCTGAGCCC
TGGCAGAAGCCCATGTGACCCACCCCGGCCGGAACTGGGCTCTGTGCCTTCCGACACTGT
CTATGTTGGGAACCTTCCCCGGGACGCCCGGGTGAGTGAGCTGAAGCGGGCCCTTGGCGC
TCTCGGCGTGGCCCCGCTGCGGCTCACCTGGCAGGGCGCGCAGCACAGGGCCTTCCTCCG
CTACCAGGACCCGGCCGCGGCCCAGCACGCTGTCTCCTGCTTGCAGGGTTTTCGCCTGGG
CGCCAACACTGTGAGGGTGTCTCTGGCCAGGCAGCAGACGGCCGGTGACCCAGCAGGTGG
CCGCACTGGAGGGCCACACCCTGACCGATGCTCGGCCGGGGCTGCCCCGTGATGATACCC
CCGTCTGGTCCCCACCGAACCTCAGAGCCCGGCGCAGAGGGACGTGGTGGGGGCTGTTCC
TGCAGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61832261|ref|XP_586958.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61832261|ref|XP_586958.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-108, - strand, RNAz p=0.997054
               

               
               310-428, - strand, RNAz p=0.800756

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-108, - strand, RNAz p=0.997054
               

               
               310-428, - strand, RNAz p=0.800756

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-543, gnl|bosTau2|chr18 (9494943-9494420)
               

               
               1-543, gnl|Hg17|chr16 (85123577-85123007)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-543, gnl|bosTau2|chr18 (9494943-9494420)
               

               
               1-543, gnl|Hg17|chr16 (85123577-85123007)

	1-108, - strand, RNAz p=0.997054
	310-428, - strand, RNAz p=0.800756

	1-543, gnl\|bosTau2\|chr18 (9494943-9494420)
	1-543, gnl\|Hg17\|chr16 (85123577-85123007)