Non-Coding RNA Search

Pig1-62C10

Sequence:


               
               GGCCGGAGAGCAGATCTCGGGGATTCGGGTGCGGAGCCCTTGGCCTGGAGGCGATATGGG
TGGTCCGTGGCCCGGTTCAGTCGCTCGCAGCAGCCGGGGGAACAGGCCTGTCTGGCCCTG
AGGGAGACCCCTTTCTGAAGCTGTGGTGCTTGGACGACCTGCTCTCCACATTGCCGGGCA
CCTGTAGGTGTCCCTCGAGAGCTCAGTTTTGAGGTTCAAGCCAGTGTGGCCATGAAGGGG
CTGCCTATTGGGCTGATGCTGTGACCCTGGAGTCTGCCTTTCCTGCCAGTCCCCCTGCCC
GGAACATGTGGCTGCGGCTTGGCCCGCCCTCGCTGTCCCTGAGCCCCAAGCCCACAGTTG
GCCGGAGCCTGTGCCTCAGCCTGTGGTTCCTCAGCTTGGTGCTGAGGGCCAGTACCCAGG
CCCCAGCACCCACAGTCAATACTCACTTTGGGAAGCTAAGGGGTGCCCGGGTACCATTGC
CCAGTGAGATCCTGGGGCCTGTGGACCAATACCTGGGGGTGCCTTACGCAGCTCCCCCGA
TC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGGAGAGCAGATCTCGGGGATTCGGGTGCGGAGCCCTTGGCCTGGAGGCGATATGGG
TGGTCCGTGGCCCGGTTCAGTCGCTCGCAGCAGCCGGGGGAACAGGCCTGTCTGGCCCTG
AGGGAGACCCCTTTCTGAAGCTGTGGTGCTTGGACGACCTGCTCTCCACATTGCCGGGCA
CCTGTAGGTGTCCCTCGAGAGCTCAGTTTTGAGGTTCAAGCCAGTGTGGCCATGAAGGGG
CTGCCTATTGGGCTGATGCTGTGACCCTGGAGTCTGCCTTTCCTGCCAGTCCCCCTGCCC
GGAACATGTGGCTGCGGCTTGGCCCGCCCTCGCTGTCCCTGAGCCCCAAGCCCACAGTTG
GCCGGAGCCTGTGCCTCAGCCTGTGGTTCCTCAGCTTGGTGCTGAGGGCCAGTACCCAGG
CCCCAGCACCCACAGTCAATACTCACTTTGGGAAGCTAAGGGGTGCCCGGGTACCATTGC
CCAGTGAGATCCTGGGGCCTGTGGACCAATACCTGGGGGTGCCTTACGCAGCTCCCCCGA
TC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-542, - strand, RNAz p=0.995203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-542, - strand, RNAz p=0.995203

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               399-505, - strand, RNAmicro p=0.998218

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               399-505, - strand, RNAmicro p=0.998218

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               341-542, DA803920 OCBBF3 Homo sapiens cDNA clone OCBBF3008867 5', mRNA 
(dbj|DA803920.1|), blast E-value=0, identity=95.54% 
               

               
               341-542, DA804308 OCBBF3 Homo sapiens cDNA clone OCBBF3009338 5', mRNA 
(dbj|DA804308.1|), blast E-value=0, identity=95.54% 
               

               
               341-542, LB02819.CR_E15 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910973.1|), 
blast E-value=0, identity=96.53% 
               

               
               341-542, LB0289.CR_B07 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915843.1|), 
blast E-value=0, identity=96.53% 
               

               
               341-542, 000204BCXB003100HT BCXB Bos taurus cDNA, mRNA sequence 
(gb|DY082229.1|), blast E-value=0, identity=96.53% 
               

               
               341-542, LB02748.CR_C09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347765.1|), 
blast E-value=0, identity=96.53%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               341-542, DA803920 OCBBF3 Homo sapiens cDNA clone OCBBF3008867 5', mRNA 
(dbj|DA803920.1|), blast E-value=0, identity=95.54% 
               

               
               341-542, DA804308 OCBBF3 Homo sapiens cDNA clone OCBBF3009338 5', mRNA 
(dbj|DA804308.1|), blast E-value=0, identity=95.54% 
               

               
               341-542, LB02819.CR_E15 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910973.1|), 
blast E-value=0, identity=96.53% 
               

               
               341-542, LB0289.CR_B07 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915843.1|), 
blast E-value=0, identity=96.53% 
               

               
               341-542, 000204BCXB003100HT BCXB Bos taurus cDNA, mRNA sequence 
(gb|DY082229.1|), blast E-value=0, identity=96.53% 
               

               
               341-542, LB02748.CR_C09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347765.1|), 
blast E-value=0, identity=96.53%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-542, gnl|bosTau2|chrX (21935308-21935748)
               

               
               102-542, gnl|Hg17|chrX (70150417-70150857)
               

               
               102-542, gnl|Mm7|chrX (96629136-96629566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-542, gnl|bosTau2|chrX (21935308-21935748)
               

               
               102-542, gnl|Hg17|chrX (70150417-70150857)
               

               
               102-542, gnl|Mm7|chrX (96629136-96629566)

	341-542, DA803920 OCBBF3 Homo sapiens cDNA clone OCBBF3008867 5', mRNA (dbj\|DA803920.1\|), blast E-value=0, identity=95.54%
	341-542, DA804308 OCBBF3 Homo sapiens cDNA clone OCBBF3009338 5', mRNA (dbj\|DA804308.1\|), blast E-value=0, identity=95.54%
	341-542, LB02819.CR_E15 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV910973.1\|), blast E-value=0, identity=96.53%
	341-542, LB0289.CR_B07 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV915843.1\|), blast E-value=0, identity=96.53%
	341-542, 000204BCXB003100HT BCXB Bos taurus cDNA, mRNA sequence (gb\|DY082229.1\|), blast E-value=0, identity=96.53%
	341-542, LB02748.CR_C09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE347765.1\|), blast E-value=0, identity=96.53%

	102-542, gnl\|bosTau2\|chrX (21935308-21935748)
	102-542, gnl\|Hg17\|chrX (70150417-70150857)
	102-542, gnl\|Mm7\|chrX (96629136-96629566)