Non-Coding RNA Search

Pig1-62C12

Sequence:


               
               GCTCTTGCCCTGGCCTCAACCATTGAATATGAAATACACTCTTCTGGCTTGCCTCTGGTT
GCATACCCCCCTCTCTCCTGTGGGACCTAAGGAACTATACCCACTTAAGAACCTGCGCCT
TCACCACATGGCATGCTAATATTTGGAATAATGGAATCCTCGCCCAAGCACTTTTGAGGC
TGCTTCCGGGGCCCGCGTGGACCTCTCCCCTTGGATACATGCAAACAGGACCCCTCACAG
TGCCAGGTAAGCAGGGATGGGAGGAAAAGGGAGGAGCAGCAGGCCAGTGGTGGCAGCTGG
GGTAGACCCCCTGTAACCTCACACATTCCAAAATCCAGGAATTTGAGTTCCGTTCCTGGC
AGTTGGGGTCATTTCAAATGTCTGTTCCTCAAAGTAGAATAGAATGTTTTCCATGTAGTC
ATTTTAGATGTTTAAACATATGGTTTCTGAGCTTCCGTTTGCATTCTTGCCATGGACCCC
ACAAATATCAGGAATAGCCCACTACCTAGAATCTGCATTATGAGTTGTGAGATCCCACAG
TCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTTGCCCTGGCCTCAACCATTGAATATGAAATACACTCTTCTGGCTTGCCTCTGGTT
GCATACCCCCCTCTCTCCTGTGGGACCTAAGGAACTATACCCACTTAAGAACCTGCGCCT
TCACCACATGGCATGCTAATATTTGGAATAATGGAATCCTCGCCCAAGCACTTTTGAGGC
TGCTTCCGGGGCCCGCGTGGACCTCTCCCCTTGGATACATGCAAACAGGACCCCTCACAG
TGCCAGGTAAGCAGGGATGGGAGGAAAAGGGAGGAGCAGCAGGCCAGTGGTGGCAGCTGG
GGTAGACCCCCTGTAACCTCACACATTCCAAAATCCAGGAATTTGAGTTCCGTTCCTGGC
AGTTGGGGTCATTTCAAATGTCTGTTCCTCAAAGTAGAATAGAATGTTTTCCATGTAGTC
ATTTTAGATGTTTAAACATATGGTTTCTGAGCTTCCGTTTGCATTCTTGCCATGGACCCC
ACAAATATCAGGAATAGCCCACTACCTAGAATCTGCATTATGAGTTGTGAGATCCCACAG
TCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               121-238, - strand, RNAz p=0.712221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-238, - strand, RNAz p=0.712221

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-503, gnl|bosTau2|chr3 (65188602-65188123)
               

               
               1-503, gnl|canFam2|chr5 (54216162-54215380)
               

               
               1-503, gnl|hg17|chr1 (58660347-58661127)
               

               
               1-503, gnl|Hg17|chr1 (58661121-58660601)
               

               
               1-503, gnl|panTro1|chr1 (56989619-56990400)
               

               
               1-503, gnl|rheMac2|chr1 (61335640-61336415)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-503, gnl|bosTau2|chr3 (65188602-65188123)
               

               
               1-503, gnl|canFam2|chr5 (54216162-54215380)
               

               
               1-503, gnl|hg17|chr1 (58660347-58661127)
               

               
               1-503, gnl|Hg17|chr1 (58661121-58660601)
               

               
               1-503, gnl|panTro1|chr1 (56989619-56990400)
               

               
               1-503, gnl|rheMac2|chr1 (61335640-61336415)

	1-503, gnl\|bosTau2\|chr3 (65188602-65188123)
	1-503, gnl\|canFam2\|chr5 (54216162-54215380)
	1-503, gnl\|hg17\|chr1 (58660347-58661127)
	1-503, gnl\|Hg17\|chr1 (58661121-58660601)
	1-503, gnl\|panTro1\|chr1 (56989619-56990400)
	1-503, gnl\|rheMac2\|chr1 (61335640-61336415)