Non-Coding RNA Search

Pig1-63F12

Sequence:


               
               GGCCCTGGCTTTGTAGCCAGGCTCCACCACTTTCGAGAAGCGTGACCTTGGACATGTCAC
TGAGCCTTTCTGGGTCTCAGCCTCTCCCCCTGTAAAATGGGAGAATGGCTTCCTCCTACA
GTGACTGTGAGGGTTGGGACATGCCACGGGCCTGCTGGTACCCAAGAGGCCCTAGCGAGA
CTCCCTGGCTCTTTCTCCCCTGCTGCCCTCCTGCCAGTCTGCTGCTGCATCTCAAGGGCT
GAGCTGTCCTGGGTTCGGGATCGTCTACCTGGGGCCCTGGGTGGTCGGAGAGCCTTTCCC
GTCGACACCCAGCAGGTAGCCAGGGCCCACAGCAACTCCACTTGACAGAGGGAGAGGTCG
AGGCTTGCAGAGTTTGCTGGCTTGACCTTGGAGTCATAGACGTAGTGAGCGGCAAGGCCA
GGAAGCAAGCTGAGGTCCCCTGGCTCCCCTGACCCCCAGAGCCAAGGCTTANATGTAAAG
CTTTACCTCCTGGCAGGCTCCCGCCACTGCCCCTCGCTCTGGGCGGGCACCAATGGTGGT
ACTGTCTACGCCTTTGCCCTGCGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTGGCTTTGTAGCCAGGCTCCACCACTTTCGAGAAGCGTGACCTTGGACATGTCAC
TGAGCCTTTCTGGGTCTCAGCCTCTCCCCCTGTAAAATGGGAGAATGGCTTCCTCCTACA
GTGACTGTGAGGGTTGGGACATGCCACGGGCCTGCTGGTACCCAAGAGGCCCTAGCGAGA
CTCCCTGGCTCTTTCTCCCCTGCTGCCCTCCTGCCAGTCTGCTGCTGCATCTCAAGGGCT
GAGCTGTCCTGGGTTCGGGATCGTCTACCTGGGGCCCTGGGTGGTCGGAGAGCCTTTCCC
GTCGACACCCAGCAGGTAGCCAGGGCCCACAGCAACTCCACTTGACAGAGGGAGAGGTCG
AGGCTTGCAGAGTTTGCTGGCTTGACCTTGGAGTCATAGACGTAGTGAGCGGCAAGGCCA
GGAAGCAAGCTGAGGTCCCCTGGCTCCCCTGACCCCCAGAGCCAAGGCTTANATGTAAAG
CTTTACCTCCTGGCAGGCTCCCGCCACTGCCCCTCGCTCTGGGCGGGCACCAATGGTGGT
ACTGTCTACGCCTTTGCCCTGCGGGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               2-110, - strand, RNAz p=0.766863
               

               
               398-567, - strand, RNAz p=0.992204

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-110, - strand, RNAz p=0.766863
               

               
               398-567, - strand, RNAz p=0.992204

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-567, gnl|bosTau2|chr19 (51526169-51525622)
               

               
               2-567, gnl|Mm7|chr11 (115961524-115962146)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-567, gnl|bosTau2|chr19 (51526169-51525622)
               

               
               2-567, gnl|Mm7|chr11 (115961524-115962146)

	2-110, - strand, RNAz p=0.766863
	398-567, - strand, RNAz p=0.992204

	2-567, gnl\|bosTau2\|chr19 (51526169-51525622)
	2-567, gnl\|Mm7\|chr11 (115961524-115962146)