Non-Coding RNA Search

Pig1-63G08

Sequence:


               
               GCGGACGCGTGGGCGGACGCGTGGGGGATTAATGACCTTGAATCCCCAGCTGTTGGGAGG
TGTCCTGAACTCGGCATCGGCCAACACCGCTAATCATCCAGAGGTTTCCATAGCAACTTC
TTCCCAGGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGACTGTCTC
AACACTTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAATGTATCTAATAA
TGCTGGGAATACATCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACT
TAACCCTCTACTGGGGACAGGTCTGCTTGGTGACATGTCCTCAATAAACAATACTTTGAA
TAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAA
TCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTTCAGGCATTTCAAGGACAGTC
CACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAACTTTCAGGT
ACTCTGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGCGGACGCGTGGGGGATTAATGACCTTGAATCCCCAGCTGTTGGGAGG
TGTCCTGAACTCGGCATCGGCCAACACCGCTAATCATCCAGAGGTTTCCATAGCAACTTC
TTCCCAGGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGACTGTCTC
AACACTTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAATGTATCTAATAA
TGCTGGGAATACATCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACT
TAACCCTCTACTGGGGACAGGTCTGCTTGGTGACATGTCCTCAATAAACAATACTTTGAA
TAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAA
TCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTTCAGGCATTTCAAGGACAGTC
CACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAACTTTCAGGT
ACTCTGCCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               65-264, - strand, RNAz p=0.947911

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-264, - strand, RNAz p=0.947911

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               76-184, - strand, RNAmicro p=0.984623

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               76-184, - strand, RNAmicro p=0.984623

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               65-248, ml71a09.r1 Stratagene mouse kidney (#937315) Mus musculus cDNA 
(gb|AA062376.1|), blast E-value=0, identity=97.83% 
               

               
               65-242, EST37461 Embryo, 8 week I Homo sapiens cDNA 5' end, mRNA sequence 
(gb|AA333394.1|), blast E-value=0, identity=96.07% 
               

               
               65-264, ml71a09.y1 Stratagene mouse kidney (#937315) Mus musculus cDNA 
(gb|AI596644.1|), blast E-value=0, identity=96.02% 
               

               
               65-264, 267207 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF602068.1|), 
blast E-value=0, identity=99% 
               

               
               65-264, 1267831 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN524216.1|), 
blast E-value=0, identity=99% 
               

               
               65-264, 1271767 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526956.1|), 
blast E-value=0, identity=99%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               65-248, ml71a09.r1 Stratagene mouse kidney (#937315) Mus musculus cDNA 
(gb|AA062376.1|), blast E-value=0, identity=97.83% 
               

               
               65-242, EST37461 Embryo, 8 week I Homo sapiens cDNA 5' end, mRNA sequence 
(gb|AA333394.1|), blast E-value=0, identity=96.07% 
               

               
               65-264, ml71a09.y1 Stratagene mouse kidney (#937315) Mus musculus cDNA 
(gb|AI596644.1|), blast E-value=0, identity=96.02% 
               

               
               65-264, 267207 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF602068.1|), 
blast E-value=0, identity=99% 
               

               
               65-264, 1267831 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN524216.1|), 
blast E-value=0, identity=99% 
               

               
               65-264, 1271767 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526956.1|), 
blast E-value=0, identity=99%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               26-331, gnl|bosTau2|chr2 (31177731-31177426)
               

               
               26-331, gnl|Hg17|chr2 (149075133-149075438)
               

               
               26-331, gnl|Mm7|chr2 (49280065-49280370)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-331, gnl|bosTau2|chr2 (31177731-31177426)
               

               
               26-331, gnl|Hg17|chr2 (149075133-149075438)
               

               
               26-331, gnl|Mm7|chr2 (49280065-49280370)

	65-248, ml71a09.r1 Stratagene mouse kidney (#937315) Mus musculus cDNA (gb\|AA062376.1\|), blast E-value=0, identity=97.83%
	65-242, EST37461 Embryo, 8 week I Homo sapiens cDNA 5' end, mRNA sequence (gb\|AA333394.1\|), blast E-value=0, identity=96.07%
	65-264, ml71a09.y1 Stratagene mouse kidney (#937315) Mus musculus cDNA (gb\|AI596644.1\|), blast E-value=0, identity=96.02%
	65-264, 267207 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF602068.1\|), blast E-value=0, identity=99%
	65-264, 1267831 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN524216.1\|), blast E-value=0, identity=99%
	65-264, 1271767 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN526956.1\|), blast E-value=0, identity=99%

	26-331, gnl\|bosTau2\|chr2 (31177731-31177426)
	26-331, gnl\|Hg17\|chr2 (149075133-149075438)
	26-331, gnl\|Mm7\|chr2 (49280065-49280370)