Non-Coding RNA Search

Pig1-63N23

Sequence:


               
               GCGCAGTCCTACCTGCGCGGAGCCAGGTGTTGCTCGCCCGACCTGTCGAAGAGCGCGGTG
GCGACGGGTGGTCTTAAGTGGGGACTTGTTTCGGAGGGACGTCCGCTTCTGGCCGGCGGA
TTGAGAAAAGAAACTTTGGGTGGCCCAGAGAAAAGAAGACTGACTCGAGGCCCAGCACTC
AGATCCCCGTGGATCCACCTGCGCGCTCATCTCTCCCAGATCATGGCCCTCCACCCCCGA
AGAGTTCGGCTGAAGCCCTGGCTGGTAGCCCAAGTGGACAGTGGCCTGTACCCTGGGCTC
ATCTGGCTGCACAGAGACTCCAAACGCTTCCAGATTCCCTGGAAACATGCCACCCGGCAT
AGCCCCCAACAGGAGGAGGAAAATACCATTTTCAAGGCCTGGGCTGTGGAGACGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCAGTCCTACCTGCGCGGAGCCAGGTGTTGCTCGCCCGACCTGTCGAAGAGCGCGGTG
GCGACGGGTGGTCTTAAGTGGGGACTTGTTTCGGAGGGACGTCCGCTTCTGGCCGGCGGA
TTGAGAAAAGAAACTTTGGGTGGCCCAGAGAAAAGAAGACTGACTCGAGGCCCAGCACTC
AGATCCCCGTGGATCCACCTGCGCGCTCATCTCTCCCAGATCATGGCCCTCCACCCCCGA
AGAGTTCGGCTGAAGCCCTGGCTGGTAGCCCAAGTGGACAGTGGCCTGTACCCTGGGCTC
ATCTGGCTGCACAGAGACTCCAAACGCTTCCAGATTCCCTGGAAACATGCCACCCGGCAT
AGCCCCCAACAGGAGGAGGAAAATACCATTTTCAAGGCCTGGGCTGTGGAGACGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47939260|gb|AAH71221.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47939260|gb|AAH71221.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-397, - strand, RNAz p=0.896162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-397, - strand, RNAz p=0.896162

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-124, gnl|bosTau2|chr16 (50833207-50833085)
               

               
               2-124, gnl|canFam2|chr7 (11424129-11424597)
               

               
               2-124, gnl|echTel1|scaffold_154809 (2466-1981)
               

               
               2-124, gnl|hg17|chr1 (206367437-206367918)
               

               
               2-124, gnl|Hg17|chr1 (206367816-206367693)
               

               
               2-124, gnl|loxAfr1|scaffold_47871 (60-532)
               

               
               2-124, gnl|mm7|chr1 (192706116-192705734)
               

               
               2-124, gnl|monDom2|scaffold_13 (12835882-12836280)
               

               
               2-124, gnl|oryCun1|scaffold_199075 (36683-37149)
               

               
               2-124, gnl|panTro1|chr1 (189983160-189983641)
               

               
               2-124, gnl|rheMac2|chr1 (160588857-160588377)
               

               
               2-124, gnl|rn3|chr13 (109176413-109176038)
               


               
               215-397, gnl|bosTau2|chr16 (50828324-50828142)
               

               
               215-397, gnl|Hg17|chr1 (206363161-206362979)
               

               
               215-397, gnl|Mm7|chr1 (192709830-192710012)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-124, gnl|bosTau2|chr16 (50833207-50833085)
               

               
               2-124, gnl|canFam2|chr7 (11424129-11424597)
               

               
               2-124, gnl|echTel1|scaffold_154809 (2466-1981)
               

               
               2-124, gnl|hg17|chr1 (206367437-206367918)
               

               
               2-124, gnl|Hg17|chr1 (206367816-206367693)
               

               
               2-124, gnl|loxAfr1|scaffold_47871 (60-532)
               

               
               2-124, gnl|mm7|chr1 (192706116-192705734)
               

               
               2-124, gnl|monDom2|scaffold_13 (12835882-12836280)
               

               
               2-124, gnl|oryCun1|scaffold_199075 (36683-37149)
               

               
               2-124, gnl|panTro1|chr1 (189983160-189983641)
               

               
               2-124, gnl|rheMac2|chr1 (160588857-160588377)
               

               
               2-124, gnl|rn3|chr13 (109176413-109176038)
               


               
               215-397, gnl|bosTau2|chr16 (50828324-50828142)
               

               
               215-397, gnl|Hg17|chr1 (206363161-206362979)
               

               
               215-397, gnl|Mm7|chr1 (192709830-192710012)

	2-124, gnl\|bosTau2\|chr16 (50833207-50833085)
	2-124, gnl\|canFam2\|chr7 (11424129-11424597)
	2-124, gnl\|echTel1\|scaffold_154809 (2466-1981)
	2-124, gnl\|hg17\|chr1 (206367437-206367918)
	2-124, gnl\|Hg17\|chr1 (206367816-206367693)
	2-124, gnl\|loxAfr1\|scaffold_47871 (60-532)
	2-124, gnl\|mm7\|chr1 (192706116-192705734)
	2-124, gnl\|monDom2\|scaffold_13 (12835882-12836280)
	2-124, gnl\|oryCun1\|scaffold_199075 (36683-37149)
	2-124, gnl\|panTro1\|chr1 (189983160-189983641)
	2-124, gnl\|rheMac2\|chr1 (160588857-160588377)
	2-124, gnl\|rn3\|chr13 (109176413-109176038)

	215-397, gnl\|bosTau2\|chr16 (50828324-50828142)
	215-397, gnl\|Hg17\|chr1 (206363161-206362979)
	215-397, gnl\|Mm7\|chr1 (192709830-192710012)