Non-Coding RNA Search

Pig1-64B02

Sequence:


               
               GCCCACGCGTACGGGCGGAGGTGGGGGAGATAATCAAGGGCTGCCGCCTGCCCGTGCTGC
GGCGGAACCAGGACAACGAAGATGAGTGGCCCCTGGCCAAGATCCTGAGCGTGAAGGACA
TCAGTGGCCGGAAGCTTTTTTACGTCCATTATATCGACTTCAACAAACGCCGGGATGAAT
GGGTGACTCATGAGCGGCTGGACCTAAAGAAGATCCAGAGCCCCAAGAAAGAGGCCAAGA
CCCCCACCAAGAACGGACTTCCTGGGTCCCGCCCCGGATCTCCAGAGAGAGAGGTGCCGG
CCTCCACCCAGGAGAAGGGGAAGACCTTGCCAATCCCGGTCCAGATGACACTCCGCTTCA
ACCTGCCCAAGGAGCGGGAGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTACGGGCGGAGGTGGGGGAGATAATCAAGGGCTGCCGCCTGCCCGTGCTGC
GGCGGAACCAGGACAACGAAGATGAGTGGCCCCTGGCCAAGATCCTGAGCGTGAAGGACA
TCAGTGGCCGGAAGCTTTTTTACGTCCATTATATCGACTTCAACAAACGCCGGGATGAAT
GGGTGACTCATGAGCGGCTGGACCTAAAGAAGATCCAGAGCCCCAAGAAAGAGGCCAAGA
CCCCCACCAAGAACGGACTTCCTGGGTCCCGCCCCGGATCTCCAGAGAGAGAGGTGCCGG
CCTCCACCCAGGAGAAGGGGAAGACCTTGCCAATCCCGGTCCAGATGACACTCCGCTTCA
ACCTGCCCAAGGAGCGGGAGGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-296, - strand, RNAz p=0.816016

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-296, - strand, RNAz p=0.816016

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               160-296, gnl|bosTau2|chr29 (38726660-38726524)
               

               
               160-296, gnl|canFam2|chr18 (54532057-54531876)
               

               
               160-296, gnl|danRer3|chr25 (2662616-2662450)
               

               
               160-296, gnl|fr1|chrUn (187783470-187783305)
               

               
               160-296, gnl|hg17|chr11 (65236931-65237112)
               

               
               160-296, gnl|Hg17|chr11 (65236969-65237105)
               

               
               160-296, gnl|loxAfr1|scaffold_15739 (58182-58001)
               

               
               160-296, gnl|mm7|chr19 (5504218-5504037)
               

               
               160-296, gnl|Mm7|chr19 (5504178-5504042)
               

               
               160-296, gnl|monDom2|scaffold_107 (3107861-3107673)
               

               
               160-296, gnl|oryCun1|scaffold_106225 (1301-1120)
               

               
               160-296, gnl|panTro1|chr9 (66482934-66483115)
               

               
               160-296, gnl|rheMac2|chr14 (8711583-8711402)
               

               
               160-296, gnl|rn3|chr1 (208393570-208393390)
               

               
               160-296, gnl|tetNig1|chr7 (4760294-4760130)
               

               
               160-296, gnl|xenTro1|scaffold_521 (538344-538169)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-296, gnl|bosTau2|chr29 (38726660-38726524)
               

               
               160-296, gnl|canFam2|chr18 (54532057-54531876)
               

               
               160-296, gnl|danRer3|chr25 (2662616-2662450)
               

               
               160-296, gnl|fr1|chrUn (187783470-187783305)
               

               
               160-296, gnl|hg17|chr11 (65236931-65237112)
               

               
               160-296, gnl|Hg17|chr11 (65236969-65237105)
               

               
               160-296, gnl|loxAfr1|scaffold_15739 (58182-58001)
               

               
               160-296, gnl|mm7|chr19 (5504218-5504037)
               

               
               160-296, gnl|Mm7|chr19 (5504178-5504042)
               

               
               160-296, gnl|monDom2|scaffold_107 (3107861-3107673)
               

               
               160-296, gnl|oryCun1|scaffold_106225 (1301-1120)
               

               
               160-296, gnl|panTro1|chr9 (66482934-66483115)
               

               
               160-296, gnl|rheMac2|chr14 (8711583-8711402)
               

               
               160-296, gnl|rn3|chr1 (208393570-208393390)
               

               
               160-296, gnl|tetNig1|chr7 (4760294-4760130)
               

               
               160-296, gnl|xenTro1|scaffold_521 (538344-538169)

	160-296, gnl\|bosTau2\|chr29 (38726660-38726524)
	160-296, gnl\|canFam2\|chr18 (54532057-54531876)
	160-296, gnl\|danRer3\|chr25 (2662616-2662450)
	160-296, gnl\|fr1\|chrUn (187783470-187783305)
	160-296, gnl\|hg17\|chr11 (65236931-65237112)
	160-296, gnl\|Hg17\|chr11 (65236969-65237105)
	160-296, gnl\|loxAfr1\|scaffold_15739 (58182-58001)
	160-296, gnl\|mm7\|chr19 (5504218-5504037)
	160-296, gnl\|Mm7\|chr19 (5504178-5504042)
	160-296, gnl\|monDom2\|scaffold_107 (3107861-3107673)
	160-296, gnl\|oryCun1\|scaffold_106225 (1301-1120)
	160-296, gnl\|panTro1\|chr9 (66482934-66483115)
	160-296, gnl\|rheMac2\|chr14 (8711583-8711402)
	160-296, gnl\|rn3\|chr1 (208393570-208393390)
	160-296, gnl\|tetNig1\|chr7 (4760294-4760130)
	160-296, gnl\|xenTro1\|scaffold_521 (538344-538169)