Non-Coding RNA Search

Pig1-64D11

Sequence:


               
               CGAGGAGGTCCTCTTCGGGGCTGGGGATAACAAGGGGACCCCACAGGGAAATAGAGAGCG
ACAGTGAGAGGCCCTTTATTGTATTTGTGTCCCCTTTCTTCCTCTCAGTCTTCCTTGTAC
CTCTTACCTATACCCGTTCCCATACTCGAAATAGAAGGCACACAGATAAAAGAAAAGGGA
GCATATGGCAATGGGTATACTAGATCGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGAGGTCCTCTTCGGGGCTGGGGATAACAAGGGGACCCCACAGGGAAATAGAGAGCG
ACAGTGAGAGGCCCTTTATTGTATTTGTGTCCCCTTTCTTCCTCTCAGTCTTCCTTGTAC
CTCTTACCTATACCCGTTCCCATACTCGAAATAGAAGGCACACAGATAAAAGAAAAGGGA
GCATATGGCAATGGGTATACTAGATCGCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               10-152, - strand, RNAz p=0.995346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-152, - strand, RNAz p=0.995346

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015086, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015086, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-192, gnl|bosTau2|chr5 (22458399-22458588)
               

               
               1-192, gnl|canFam2|chr27 (8586362-8585889)
               

               
               1-192, gnl|dasNov1|scaffold_3021 (106455-106922)
               

               
               1-192, gnl|hg17|chr12 (47676567-47677030)
               

               
               1-192, gnl|Hg17|chr12 (47676856-47676628)
               

               
               1-192, gnl|loxAfr1|scaffold_106152 (8666-8195)
               

               
               1-192, gnl|mm7|chr15 (98790339-98790772)
               

               
               1-192, gnl|Mm7|chr15 (98790598-98790365)
               

               
               1-192, gnl|monDom2|scaffold_539 (32067-32557)
               

               
               1-192, gnl|oryCun1|scaffold_204637 (39973-40392)
               

               
               1-192, gnl|panTro1|chr10 (48850052-48850515)
               

               
               1-192, gnl|rheMac2|chr11 (46123736-46124200)
               

               
               1-192, gnl|rn3|chr7 (137650261-137650681)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-192, gnl|bosTau2|chr5 (22458399-22458588)
               

               
               1-192, gnl|canFam2|chr27 (8586362-8585889)
               

               
               1-192, gnl|dasNov1|scaffold_3021 (106455-106922)
               

               
               1-192, gnl|hg17|chr12 (47676567-47677030)
               

               
               1-192, gnl|Hg17|chr12 (47676856-47676628)
               

               
               1-192, gnl|loxAfr1|scaffold_106152 (8666-8195)
               

               
               1-192, gnl|mm7|chr15 (98790339-98790772)
               

               
               1-192, gnl|Mm7|chr15 (98790598-98790365)
               

               
               1-192, gnl|monDom2|scaffold_539 (32067-32557)
               

               
               1-192, gnl|oryCun1|scaffold_204637 (39973-40392)
               

               
               1-192, gnl|panTro1|chr10 (48850052-48850515)
               

               
               1-192, gnl|rheMac2|chr11 (46123736-46124200)
               

               
               1-192, gnl|rn3|chr7 (137650261-137650681)

	1-192, gnl\|bosTau2\|chr5 (22458399-22458588)
	1-192, gnl\|canFam2\|chr27 (8586362-8585889)
	1-192, gnl\|dasNov1\|scaffold_3021 (106455-106922)
	1-192, gnl\|hg17\|chr12 (47676567-47677030)
	1-192, gnl\|Hg17\|chr12 (47676856-47676628)
	1-192, gnl\|loxAfr1\|scaffold_106152 (8666-8195)
	1-192, gnl\|mm7\|chr15 (98790339-98790772)
	1-192, gnl\|Mm7\|chr15 (98790598-98790365)
	1-192, gnl\|monDom2\|scaffold_539 (32067-32557)
	1-192, gnl\|oryCun1\|scaffold_204637 (39973-40392)
	1-192, gnl\|panTro1\|chr10 (48850052-48850515)
	1-192, gnl\|rheMac2\|chr11 (46123736-46124200)
	1-192, gnl\|rn3\|chr7 (137650261-137650681)