Non-Coding RNA Search

Pig1-65B03

Sequence:


               
               GCCCACGCGTCCGAACAAACCCAACTAGTATCCATGAGGATGCAGTTCTTATAGAATCGG
AGAAATCAGAGATAGCAAGATTGGAATGGGACTTTGGAGACCTGTCCAGAATGGATAAAT
GGATTTCATCTCTCCTGCAAGGTGGTGGATGAGCAACGGCTGCCTGGAAAGCACTGATGG
AGAAGAATTCTCCTTGTCGTGTCGACTAGTGATGTCTGCCCTTCAAAACAACTAGTGATG
TCTGCCCTGGGCAAAGGGCANAAGTATGACCACATACACATGGTCAGGGTATTGGCCATC
CCTAGGTTAGTCCCTTCCTATCATTTGGGTAAAACTTGTAAAGCTGGGTAATAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGAACAAACCCAACTAGTATCCATGAGGATGCAGTTCTTATAGAATCGG
AGAAATCAGAGATAGCAAGATTGGAATGGGACTTTGGAGACCTGTCCAGAATGGATAAAT
GGATTTCATCTCTCCTGCAAGGTGGTGGATGAGCAACGGCTGCCTGGAAAGCACTGATGG
AGAAGAATTCTCCTTGTCGTGTCGACTAGTGATGTCTGCCCTTCAAAACAACTAGTGATG
TCTGCCCTGGGCAAAGGGCANAAGTATGACCACATACACATGGTCAGGGTATTGGCCATC
CCTAGGTTAGTCCCTTCCTATCATTTGGGTAAAACTTGTAAAGCTGGGTAATAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-336, - strand, RNAz p=0.886722

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-336, - strand, RNAz p=0.886722

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               46-220, gnl|bosTau2|chr14 (3738191-3738019)
               

               
               46-220, gnl|Hg17|chr8 (134409312-134409569)
               


               
               223-356, gnl|bosTau2|chr14 (3738042-3737911)
               

               
               223-356, gnl|Hg17|chr8 (134409462-134409704)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-220, gnl|bosTau2|chr14 (3738191-3738019)
               

               
               46-220, gnl|Hg17|chr8 (134409312-134409569)
               


               
               223-356, gnl|bosTau2|chr14 (3738042-3737911)
               

               
               223-356, gnl|Hg17|chr8 (134409462-134409704)

	46-220, gnl\|bosTau2\|chr14 (3738191-3738019)
	46-220, gnl\|Hg17\|chr8 (134409312-134409569)

	223-356, gnl\|bosTau2\|chr14 (3738042-3737911)
	223-356, gnl\|Hg17\|chr8 (134409462-134409704)