Non-Coding RNA Search

Pig1-65G06

Sequence:


               
               GGGTTTTCTGGGCTCTGGTCTCCCTCGGTATTGGGGTGAGGGCCGAGATTGCTGCCTTTG
ATGGGTACTTAGCCTCTCACCCCATTTAGCCTCCACAGTCTTTGCACCCAGTCTAAATTC
TTGAGTGTTTTGGTTTCATTCTGAGCAAAATTTGCTGGCCTTCTAATACGTAATTTCATT
GTCAATCTGAGCCTTTAAATCAGACCCCCTTAAATTATGGAGTTTTAGCCGAGGGGAATA
GAACTAAGCAGTACTCATATACCTCTAGCCAGCACCCATGTCGGGGGCATTCTGATGGCT
GGGCTGGAGCCGTCCCTGGGCCAGCCCTCAAAACAGCTCCCAGTGCCCCCGTCTTTCCCC
TGGAAACCTCACTGGTTCTTGCCTTGCTGCCAGGGAGGCGTGCCCTGTGGGGCAGTGGCC
CTGGACATGCTGAAGCCTGGGGGTGGTTTCCCCTGCCGTCCTTTCGGAAAAAGCACATCT
GTTCACATATTACTTACCAAAGAAGGGCTGGTCGGCCGCTGCCAACCTTGTTTGCACATA
GGCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTTCTGGGCTCTGGTCTCCCTCGGTATTGGGGTGAGGGCCGAGATTGCTGCCTTTG
ATGGGTACTTAGCCTCTCACCCCATTTAGCCTCCACAGTCTTTGCACCCAGTCTAAATTC
TTGAGTGTTTTGGTTTCATTCTGAGCAAAATTTGCTGGCCTTCTAATACGTAATTTCATT
GTCAATCTGAGCCTTTAAATCAGACCCCCTTAAATTATGGAGTTTTAGCCGAGGGGAATA
GAACTAAGCAGTACTCATATACCTCTAGCCAGCACCCATGTCGGGGGCATTCTGATGGCT
GGGCTGGAGCCGTCCCTGGGCCAGCCCTCAAAACAGCTCCCAGTGCCCCCGTCTTTCCCC
TGGAAACCTCACTGGTTCTTGCCTTGCTGCCAGGGAGGCGTGCCCTGTGGGGCAGTGGCC
CTGGACATGCTGAAGCCTGGGGGTGGTTTCCCCTGCCGTCCTTTCGGAAAAAGCACATCT
GTTCACATATTACTTACCAAAGAAGGGCTGGTCGGCCGCTGCCAACCTTGTTTGCACATA
GGCGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-118, - strand, RNAz p=0.807553

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-118, - strand, RNAz p=0.807553

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-387, gnl|bosTau2|chr3 (4631459-4631064)
               

               
               2-387, gnl|Hg17|chr1 (157209377-157209751)
               

               
               2-387, gnl|Mm7|chr1 (171973385-171973005)
               


               
               419-545, gnl|bosTau2|chr3 (4630996-4630870)
               

               
               419-545, gnl|Hg17|chr1 (157209818-157209947)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-387, gnl|bosTau2|chr3 (4631459-4631064)
               

               
               2-387, gnl|Hg17|chr1 (157209377-157209751)
               

               
               2-387, gnl|Mm7|chr1 (171973385-171973005)
               


               
               419-545, gnl|bosTau2|chr3 (4630996-4630870)
               

               
               419-545, gnl|Hg17|chr1 (157209818-157209947)

	2-387, gnl\|bosTau2\|chr3 (4631459-4631064)
	2-387, gnl\|Hg17\|chr1 (157209377-157209751)
	2-387, gnl\|Mm7\|chr1 (171973385-171973005)

	419-545, gnl\|bosTau2\|chr3 (4630996-4630870)
	419-545, gnl\|Hg17\|chr1 (157209818-157209947)