Non-Coding RNA Search

Pig1-65I20

Sequence:


               
               CCATCTGCCGGCAGGAAGGGCCCCCAACTGAGTCCTCAGCCCCAGAAGAAGGCCCCCCCA
TCCCCAGGTGCCCGGAAGAGTGCCCCAAGCTCCAAGGCCACCCCTCAGGCCTCAGAGGCA
GTCACCACCCAGTTACTGGGACAGCCTCCCATCCAAGAGGGGGGCCCCAAGGCCCAGGGC
ATGCGGTAGCCCCACCAGGAGGCTGGGGGCCTCCACCCAGCAGCAGACCAACAAGGAAGC
AGCTCGAACCAACGGAGACTTTCCTAATACGGAACTAAACGGAGGTTCACTGAGGAGGCA
CCACTCGGGACCTCTCTGAGAAGCCTCTCCTCAGTCGGCTCCTCATCAGATGGCTTGGTG
CCTGGCACCCAGCCCGGTGGCCTCTCCTGGTGCCGTCACCGCCCAGGGCCCCCAGGCCCC
ACCTCCAAGTGCCTGGCGGCCTANGCCCTCCTTGAAGTTTACACTGGCCACTGCTGGAGG
CTCCCTGAGTCCTCTGCATGAGTTCTGCCACCACCCCTTCACCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCTGCCGGCAGGAAGGGCCCCCAACTGAGTCCTCAGCCCCAGAAGAAGGCCCCCCCA
TCCCCAGGTGCCCGGAAGAGTGCCCCAAGCTCCAAGGCCACCCCTCAGGCCTCAGAGGCA
GTCACCACCCAGTTACTGGGACAGCCTCCCATCCAAGAGGGGGGCCCCAAGGCCCAGGGC
ATGCGGTAGCCCCACCAGGAGGCTGGGGGCCTCCACCCAGCAGCAGACCAACAAGGAAGC
AGCTCGAACCAACGGAGACTTTCCTAATACGGAACTAAACGGAGGTTCACTGAGGAGGCA
CCACTCGGGACCTCTCTGAGAAGCCTCTCCTCAGTCGGCTCCTCATCAGATGGCTTGGTG
CCTGGCACCCAGCCCGGTGGCCTCTCCTGGTGCCGTCACCGCCCAGGGCCCCCAGGCCCC
ACCTCCAAGTGCCTGGCGGCCTANGCCCTCCTTGAAGTTTACACTGGCCACTGCTGGAGG
CTCCCTGAGTCCTCTGCATGAGTTCTGCCACCACCCCTTCACCCTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-196, - strand, RNAz p=0.988483
               

               
               351-458, - strand, RNAz p=0.981047

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-196, - strand, RNAz p=0.988483
               

               
               351-458, - strand, RNAz p=0.981047

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               38-222, - strand, RNAmicro p=0.99975

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               38-222, - strand, RNAmicro p=0.99975

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-501, gnl|bosTau2|chr21 (12880684-12881188)
               

               
               1-501, gnl|Hg17|chr15 (83212500-83213021)
               

               
               1-501, gnl|Mm7|chr7 (76975568-76976069)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chr21 (12880684-12881188)
               

               
               1-501, gnl|Hg17|chr15 (83212500-83213021)
               

               
               1-501, gnl|Mm7|chr7 (76975568-76976069)

	1-196, - strand, RNAz p=0.988483
	351-458, - strand, RNAz p=0.981047

	1-501, gnl\|bosTau2\|chr21 (12880684-12881188)
	1-501, gnl\|Hg17\|chr15 (83212500-83213021)
	1-501, gnl\|Mm7\|chr7 (76975568-76976069)