Non-Coding RNA Search

Pig1-65O08

Sequence:


               
               CTGGCTGCGCTCGAGGAGGGAACCAGGTTGGGGGGAGTTGGCGCCACAAATTGATGGTCA
GACCTGGGCTGAGCGGGCACTTCGAGAGAATGAACGCCATGCCTTCACCTGCCGGGTGGC
AGGGGGGCCTGGCACCCCCCGATTGGCCTGGTACCTGGATGGACAGCTACAGGAGGCCAG
CTCCTCGAGACTACTGAGCGTGGGTGGGAAGGCCTTCTCCGGAGGCACCAGCACTTTCAC
TGTCACTGCCCAGAGGGCTCAGCATGAGCTCAACTGCTCCCTGCAGGACCCAAGCAGTGG
CCGGTCAGCCAACGCTTCCGTCATCCTCAATGTACAATTTAAGCCGGAGATTGCCCAGGG
TGGGGCCAAGTACCAAGAAGCTCAGGGCCCAGGCCTCCTGGTCGTACTTTTTGCCCTGGT
GCGTGCCAACCCGCCTGCCAATGTGACCTGGATCGACCAGGATGGGCCGGTGACTGTCAA
CGCCTCTGACTTCCTGGTGCTGGATGCCCANAACTACCCCTGGCTCACCAACCACACTGT
GCAGCTGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTGCGCTCGAGGAGGGAACCAGGTTGGGGGGAGTTGGCGCCACAAATTGATGGTCA
GACCTGGGCTGAGCGGGCACTTCGAGAGAATGAACGCCATGCCTTCACCTGCCGGGTGGC
AGGGGGGCCTGGCACCCCCCGATTGGCCTGGTACCTGGATGGACAGCTACAGGAGGCCAG
CTCCTCGAGACTACTGAGCGTGGGTGGGAAGGCCTTCTCCGGAGGCACCAGCACTTTCAC
TGTCACTGCCCAGAGGGCTCAGCATGAGCTCAACTGCTCCCTGCAGGACCCAAGCAGTGG
CCGGTCAGCCAACGCTTCCGTCATCCTCAATGTACAATTTAAGCCGGAGATTGCCCAGGG
TGGGGCCAAGTACCAAGAAGCTCAGGGCCCAGGCCTCCTGGTCGTACTTTTTGCCCTGGT
GCGTGCCAACCCGCCTGCCAATGTGACCTGGATCGACCAGGATGGGCCGGTGACTGTCAA
CGCCTCTGACTTCCTGGTGCTGGATGCCCANAACTACCCCTGGCTCACCAACCACACTGT
GCAGCTGCAGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|37182956|gb|AAQ89278.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|37182956|gb|AAQ89278.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               25-143, - strand, RNAz p=0.720864
               

               
               224-343, - strand, RNAz p=0.742318

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-143, - strand, RNAz p=0.720864
               

               
               224-343, - strand, RNAz p=0.742318

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               25-343, gnl|bosTau2|chr15 (15012293-15011975)
               

               
               25-343, gnl|Hg17|chr11 (117908073-117908391)
               

               
               25-343, gnl|Mm7|chr9 (44732779-44732461)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-343, gnl|bosTau2|chr15 (15012293-15011975)
               

               
               25-343, gnl|Hg17|chr11 (117908073-117908391)
               

               
               25-343, gnl|Mm7|chr9 (44732779-44732461)

	25-143, - strand, RNAz p=0.720864
	224-343, - strand, RNAz p=0.742318

	25-343, gnl\|bosTau2\|chr15 (15012293-15011975)
	25-343, gnl\|Hg17\|chr11 (117908073-117908391)
	25-343, gnl\|Mm7\|chr9 (44732779-44732461)