Non-Coding RNA Search

Pig1-65P24

Sequence:


               
               CTGACCTGTGGAATTACCTAAAATTCTAATTCTCCAAGTGGGGCGTGCATACTCCTGGGA
CCATTAGCAGAGTCCCCGTGCATGTGGGGAGTGGGGTGGGGGTGACAGTGAAGATTAGTT
TTATGCAAAGATTTTAAAGAAAATTTAAATTTCATTATAGTAAAACTGAACATACGTGaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGGG
GGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACCTGTGGAATTACCTAAAATTCTAATTCTCCAAGTGGGGCGTGCATACTCCTGGGA
CCATTAGCAGAGTCCCCGTGCATGTGGGGAGTGGGGTGGGGGTGACAGTGAAGATTAGTT
TTATGCAAAGATTTTAAAGAAAATTTAAATTTCATTATAGTAAAACTGAACATACGTGaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGGG
GGGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               46-147, - strand, RNAz p=0.971276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-147, - strand, RNAz p=0.971276

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-147, gnl|bosTau2|chr28 (23213728-23213874)
               

               
               2-147, gnl|canFam2|chr4 (27721632-27721791)
               

               
               2-147, gnl|dasNov1|scaffold_15184 (53455-53285)
               

               
               2-147, gnl|echTel1|scaffold_322040 (69037-69203)
               

               
               2-147, gnl|hg17|chr10 (75539860-75540003)
               

               
               2-147, gnl|mm7|chr14 (18683806-18683927)
               

               
               2-147, gnl|oryCun1|scaffold_125435 (10324-10176)
               

               
               2-147, gnl|panTro1|chr8 (76779035-76779178)
               

               
               2-147, gnl|rheMac2|chr9 (62904884-62904744)
               

               
               2-147, gnl|rn3|chr15 (3488052-3487913)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-147, gnl|bosTau2|chr28 (23213728-23213874)
               

               
               2-147, gnl|canFam2|chr4 (27721632-27721791)
               

               
               2-147, gnl|dasNov1|scaffold_15184 (53455-53285)
               

               
               2-147, gnl|echTel1|scaffold_322040 (69037-69203)
               

               
               2-147, gnl|hg17|chr10 (75539860-75540003)
               

               
               2-147, gnl|mm7|chr14 (18683806-18683927)
               

               
               2-147, gnl|oryCun1|scaffold_125435 (10324-10176)
               

               
               2-147, gnl|panTro1|chr8 (76779035-76779178)
               

               
               2-147, gnl|rheMac2|chr9 (62904884-62904744)
               

               
               2-147, gnl|rn3|chr15 (3488052-3487913)

	2-147, gnl\|bosTau2\|chr28 (23213728-23213874)
	2-147, gnl\|canFam2\|chr4 (27721632-27721791)
	2-147, gnl\|dasNov1\|scaffold_15184 (53455-53285)
	2-147, gnl\|echTel1\|scaffold_322040 (69037-69203)
	2-147, gnl\|hg17\|chr10 (75539860-75540003)
	2-147, gnl\|mm7\|chr14 (18683806-18683927)
	2-147, gnl\|oryCun1\|scaffold_125435 (10324-10176)
	2-147, gnl\|panTro1\|chr8 (76779035-76779178)
	2-147, gnl\|rheMac2\|chr9 (62904884-62904744)
	2-147, gnl\|rn3\|chr15 (3488052-3487913)