Non-Coding RNA Search

Pig1-66C19

Sequence:


               
               GCCGAGGATTACGTGGAAGAATTGCAGAAATGGCGATGCCCTGATTACTACGAAAACAAC
GTCCACAAGATGCAGCTCCCATTTTCCAGCAAGCTCCTAGGCAGCACCCTGACCTCTGAG
GAGAAGCAGGAGAGGCGACAGCAGCAACTGCGGCGGCTGCAGGAGCTCAACGCCCGGCGG
CGGGAGGAGAAGCTGCAGCTGGATCAGGAGCGGCTGGACAGGCTGCTCTACGTGCAGGAG
CTCCTAGAGGATGGCCAAATGGATCAGTTCCACAAAGCCCTGATAGAGCTGAACATGGAC
TCCCCGGAGGAGCTGCAGTCCTACATACAGAAGCTCAGTGCAGCAGTGGAGCAGGCTAAG
CAGAAGATGCTTCAGGCGGAGGTCAGCCTCGAGGTGGATGTGGTGGACAGCAAGCCAGAG
ACCCCTGACCTGGAGCAGCTCGAGCCGTCTCTGGAAGAAGTGGAAAGCATCAATGATTTC
GAGCCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGAGGATTACGTGGAAGAATTGCAGAAATGGCGATGCCCTGATTACTACGAAAACAAC
GTCCACAAGATGCAGCTCCCATTTTCCAGCAAGCTCCTAGGCAGCACCCTGACCTCTGAG
GAGAAGCAGGAGAGGCGACAGCAGCAACTGCGGCGGCTGCAGGAGCTCAACGCCCGGCGG
CGGGAGGAGAAGCTGCAGCTGGATCAGGAGCGGCTGGACAGGCTGCTCTACGTGCAGGAG
CTCCTAGAGGATGGCCAAATGGATCAGTTCCACAAAGCCCTGATAGAGCTGAACATGGAC
TCCCCGGAGGAGCTGCAGTCCTACATACAGAAGCTCAGTGCAGCAGTGGAGCAGGCTAAG
CAGAAGATGCTTCAGGCGGAGGTCAGCCTCGAGGTGGATGTGGTGGACAGCAAGCCAGAG
ACCCCTGACCTGGAGCAGCTCGAGCCGTCTCTGGAAGAAGTGGAAAGCATCAATGATTTC
GAGCCCTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               122-238, + strand, RNAz p=0.896793
               

               
               137-238, - strand, RNAz p=0.654201

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-238, + strand, RNAz p=0.896793
               

               
               137-238, - strand, RNAz p=0.654201

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               9-238, gnl|bosTau2|chr20 (23025717-23025946)
               

               
               9-238, gnl|canFam2|chr24 (30134214-30134489)
               

               
               9-238, gnl|danRer3|chr18 (34671183-34671415)
               

               
               9-238, gnl|dasNov1|scaffold_10865 (17861-17586)
               

               
               9-238, gnl|echTel1|scaffold_168113 (1033-1275)
               

               
               9-238, gnl|fr1|chrUn (273848154-273848388)
               

               
               9-238, gnl|galGal2|chr20 (3566326-3566577)
               

               
               9-238, gnl|hg17|chr20 (36816971-36817246)
               

               
               9-238, gnl|Hg17|chr20 (36817003-36817232)
               

               
               9-238, gnl|loxAfr1|scaffold_69006 (4-244)
               

               
               9-238, gnl|mm7|chr2 (158372337-158372585)
               

               
               9-238, gnl|Mm7|chr2 (158372342-158372575)
               

               
               9-238, gnl|monDom2|scaffold_6 (3140476-3140746)
               

               
               9-238, gnl|oryCun1|scaffold_214449 (119974-119713)
               

               
               9-238, gnl|panTro1|chr21 (39198287-39198562)
               

               
               9-238, gnl|rheMac2|chr10 (25696772-25696497)
               

               
               9-238, gnl|tetNig1|chr9 (1118039-1118277)
               

               
               9-238, gnl|xenTro1|scaffold_35 (550386-550636)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-238, gnl|bosTau2|chr20 (23025717-23025946)
               

               
               9-238, gnl|canFam2|chr24 (30134214-30134489)
               

               
               9-238, gnl|danRer3|chr18 (34671183-34671415)
               

               
               9-238, gnl|dasNov1|scaffold_10865 (17861-17586)
               

               
               9-238, gnl|echTel1|scaffold_168113 (1033-1275)
               

               
               9-238, gnl|fr1|chrUn (273848154-273848388)
               

               
               9-238, gnl|galGal2|chr20 (3566326-3566577)
               

               
               9-238, gnl|hg17|chr20 (36816971-36817246)
               

               
               9-238, gnl|Hg17|chr20 (36817003-36817232)
               

               
               9-238, gnl|loxAfr1|scaffold_69006 (4-244)
               

               
               9-238, gnl|mm7|chr2 (158372337-158372585)
               

               
               9-238, gnl|Mm7|chr2 (158372342-158372575)
               

               
               9-238, gnl|monDom2|scaffold_6 (3140476-3140746)
               

               
               9-238, gnl|oryCun1|scaffold_214449 (119974-119713)
               

               
               9-238, gnl|panTro1|chr21 (39198287-39198562)
               

               
               9-238, gnl|rheMac2|chr10 (25696772-25696497)
               

               
               9-238, gnl|tetNig1|chr9 (1118039-1118277)
               

               
               9-238, gnl|xenTro1|scaffold_35 (550386-550636)

	122-238, + strand, RNAz p=0.896793
	137-238, - strand, RNAz p=0.654201

	9-238, gnl\|bosTau2\|chr20 (23025717-23025946)
	9-238, gnl\|canFam2\|chr24 (30134214-30134489)
	9-238, gnl\|danRer3\|chr18 (34671183-34671415)
	9-238, gnl\|dasNov1\|scaffold_10865 (17861-17586)
	9-238, gnl\|echTel1\|scaffold_168113 (1033-1275)
	9-238, gnl\|fr1\|chrUn (273848154-273848388)
	9-238, gnl\|galGal2\|chr20 (3566326-3566577)
	9-238, gnl\|hg17\|chr20 (36816971-36817246)
	9-238, gnl\|Hg17\|chr20 (36817003-36817232)
	9-238, gnl\|loxAfr1\|scaffold_69006 (4-244)
	9-238, gnl\|mm7\|chr2 (158372337-158372585)
	9-238, gnl\|Mm7\|chr2 (158372342-158372575)
	9-238, gnl\|monDom2\|scaffold_6 (3140476-3140746)
	9-238, gnl\|oryCun1\|scaffold_214449 (119974-119713)
	9-238, gnl\|panTro1\|chr21 (39198287-39198562)
	9-238, gnl\|rheMac2\|chr10 (25696772-25696497)
	9-238, gnl\|tetNig1\|chr9 (1118039-1118277)
	9-238, gnl\|xenTro1\|scaffold_35 (550386-550636)