Non-Coding RNA Search

Pig1-66F24

Sequence:


               
               GGTGGGAAAAGCAGGTGCGAGTGCTGACAGAGGCTGTGGATGACATCACCTCCGTGGATG
ACTTCCTTTCTGTCTCAGAGAATCATATCTTGGAGGATGTGAACAAGTGTGTGATAGCCC
TTCAAGAGGGGGATGTGGACACTCTGGACCGGACAGCAGGGGCCATCAGGGGCCGGGCAG
CTCGAGTCATACACATCATCAATGCTGAGATGGAGAACTATGAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGAAAAGCAGGTGCGAGTGCTGACAGAGGCTGTGGATGACATCACCTCCGTGGATG
ACTTCCTTTCTGTCTCAGAGAATCATATCTTGGAGGATGTGAACAAGTGTGTGATAGCCC
TTCAAGAGGGGGATGTGGACACTCTGGACCGGACAGCAGGGGCCATCAGGGGCCGGGCAG
CTCGAGTCATACACATCATCAATGCTGAGATGGAGAACTATGAAACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               73-191, - strand, RNAz p=0.544647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-191, - strand, RNAz p=0.544647

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               73-228, gnl|bosTau2|chr11 (38682967-38683122)
               

               
               73-228, gnl|canFam2|chr17 (46645361-46645145)
               

               
               73-228, gnl|danRer3|chr1 (48992905-48993118)
               

               
               73-228, gnl|dasNov1|scaffold_656 (112892-112674)
               

               
               73-228, gnl|echTel1|scaffold_325233 (42812-43019)
               

               
               73-228, gnl|fr1|chrUn (130255591-130255382)
               

               
               73-228, gnl|galGal2|chr4 (87538849-87538631)
               

               
               73-228, gnl|hg17|chr2 (80694471-80694689)
               

               
               73-228, gnl|Hg17|chr2 (80694470-80694625)
               

               
               73-228, gnl|loxAfr1|scaffold_74028 (4851-4633)
               

               
               73-228, gnl|mm7|chr6 (76991822-76991604)
               

               
               73-228, gnl|Mm7|chr6 (76991821-76991666)
               

               
               73-228, gnl|monDom2|scaffold_68 (3078853-3079071)
               

               
               73-228, gnl|oryCun1|scaffold_210935 (44372-44580)
               

               
               73-228, gnl|panTro1|chr12 (83509542-83509760)
               

               
               73-228, gnl|rheMac2|chr13 (80974045-80974263)
               

               
               73-228, gnl|rn3|chr4 (111103069-111102851)
               

               
               73-228, gnl|tetNig1|chr1 (2600039-2600246)
               

               
               73-228, gnl|xenTro1|scaffold_10 (515350-515141)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-228, gnl|bosTau2|chr11 (38682967-38683122)
               

               
               73-228, gnl|canFam2|chr17 (46645361-46645145)
               

               
               73-228, gnl|danRer3|chr1 (48992905-48993118)
               

               
               73-228, gnl|dasNov1|scaffold_656 (112892-112674)
               

               
               73-228, gnl|echTel1|scaffold_325233 (42812-43019)
               

               
               73-228, gnl|fr1|chrUn (130255591-130255382)
               

               
               73-228, gnl|galGal2|chr4 (87538849-87538631)
               

               
               73-228, gnl|hg17|chr2 (80694471-80694689)
               

               
               73-228, gnl|Hg17|chr2 (80694470-80694625)
               

               
               73-228, gnl|loxAfr1|scaffold_74028 (4851-4633)
               

               
               73-228, gnl|mm7|chr6 (76991822-76991604)
               

               
               73-228, gnl|Mm7|chr6 (76991821-76991666)
               

               
               73-228, gnl|monDom2|scaffold_68 (3078853-3079071)
               

               
               73-228, gnl|oryCun1|scaffold_210935 (44372-44580)
               

               
               73-228, gnl|panTro1|chr12 (83509542-83509760)
               

               
               73-228, gnl|rheMac2|chr13 (80974045-80974263)
               

               
               73-228, gnl|rn3|chr4 (111103069-111102851)
               

               
               73-228, gnl|tetNig1|chr1 (2600039-2600246)
               

               
               73-228, gnl|xenTro1|scaffold_10 (515350-515141)

	73-228, gnl\|bosTau2\|chr11 (38682967-38683122)
	73-228, gnl\|canFam2\|chr17 (46645361-46645145)
	73-228, gnl\|danRer3\|chr1 (48992905-48993118)
	73-228, gnl\|dasNov1\|scaffold_656 (112892-112674)
	73-228, gnl\|echTel1\|scaffold_325233 (42812-43019)
	73-228, gnl\|fr1\|chrUn (130255591-130255382)
	73-228, gnl\|galGal2\|chr4 (87538849-87538631)
	73-228, gnl\|hg17\|chr2 (80694471-80694689)
	73-228, gnl\|Hg17\|chr2 (80694470-80694625)
	73-228, gnl\|loxAfr1\|scaffold_74028 (4851-4633)
	73-228, gnl\|mm7\|chr6 (76991822-76991604)
	73-228, gnl\|Mm7\|chr6 (76991821-76991666)
	73-228, gnl\|monDom2\|scaffold_68 (3078853-3079071)
	73-228, gnl\|oryCun1\|scaffold_210935 (44372-44580)
	73-228, gnl\|panTro1\|chr12 (83509542-83509760)
	73-228, gnl\|rheMac2\|chr13 (80974045-80974263)
	73-228, gnl\|rn3\|chr4 (111103069-111102851)
	73-228, gnl\|tetNig1\|chr1 (2600039-2600246)
	73-228, gnl\|xenTro1\|scaffold_10 (515350-515141)